Publications

Colin W. Glass, Steffen Reiser, Gábor Rutkai, Stephan Deublein, Andreas Köster, Gabriela Guevara-Carrion, Amer Wafai, Martin Horsch, Martin Bernreuther, Thorsten Windmann, Hans Hasse, and Jadran Vrabec. ms2: A molecular simulation tool for thermodynamic properties, new version release. An International Journal and Program Library for Computational Physics and Physical Chemistry, (185)12:3302--3306, July 2014. [PUMA: Carlo HLRS Molecular Monte SCOPE Transport Vapor--liquid derivatives dynamics equilibrium myown potential properties simulation]

V. Janjic, K. Hammond, M. Goli, J. McCall, K. Idrees, C. Glass, and M. A. Wafai. Bridging the Divide: A New Methodology for Semi-Automatic Programming of Heterogeneous Parallel Machines. High-Level Programming for Heterogeneous and Hierarchical Parallel Systems, January 2016. [PUMA: HLRS Heterogeneous Parallel SCOPE myown]

Mhd. Amer Wafai, Zaheer Ahmed, Rainer Keller, Sven Holzmann, Björn Sander, and Michael Resch. Optimization of industrial Neural Network simulators for GPGPUs. In Dickson K. W. Chiu, Minhong Wang, Elvira Popescu, Qing Li, and Rynson Lau (Eds.), New Horizons in Web Based Learning, (7697):21-29, Springer Berlin Heidelberg, December 2011. [PUMA: Back CUDA GPGPU GPU HLRS Network Neural Parallelisation Propagation SCOPE myown]

Dariusz Król, Michał Orzechowski, Jacek Kitowski, Christoph Niethammer, Anthony Sulistio, and Amer Wafai. A Cloud-based Data Farming Platform for Molecular Dynamics Simulations. Utility and Cloud Computing (UCC), 579 - 584, IEEE, December 2014. [PUMA: Cloud Data HLRS MD SCOPE computing farming myown simulations]

Nikola Tchipev, Amer Wafai, Colin W. Glass, Wolfgang Eckhardt, Alexander Heinecke, Hans-Joachim Bungartz, and Philipp Neumann. Optimized Force Calculation of Molecular Dynamics Simulations for the Intel Xeon Phi. In Jesper Larsson Träff, Sascha Hunold, and Francesco Versaci (Eds.), Euro-Par 2015: Parallel Processing, (9233)Vienna, Austria, August 2015. [PUMA: HLRS SCOPE absolute and calculation cell colored core distributed dynamic force gather intel interaction law linked memory molecular myown newton operation optimization parallel parallelization performance phi processing range scatter shared short site third xeon yellow]

Mhd. Amer Wafai, Colin W. Glass, and Christoph Niethammer. Portable Codes on New HPC Architectures. In Rainer Keller, David Kramer, and Jan-Philipp Weiß (Eds.), Facing the Multicore-Challenge III 2012, (7686):133-134, Springer Berlin Heidelberg, September 2012. [PUMA: GPU HLRS HPC Hardware Parallel Portable Programming SCOPE architecture mown myown]

Mhd. Amer Wafai. Sparse matrix vector multiplications on graphic processors. Nobelstr. 19, 70569, Stuttgart, November 2009. [PUMA: Architecture CUDA Compute Device GPU Graphics HLRS Processing SCOPE Unified Unit myown]