Publications

Michael Krone, Florian Frieß, Katrin Scharnowski, Guido Reina, Silvia Fademrecht, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Molecular Surface Maps. IEEE Transactions on Visualization and Computer Graphics, (23)12017. [PUMA: 2017 biovis from:mueller sfb716-c1 sfb716-d3 sfb716-d4-ertl sfb716-d4-pleiss sfbtrr161 vis(us) vis-ertl vis-gis visus visus:ertl visus:friessfn visus:kroneml visus:pleissjn visus:reina visus:scharnkn] URL

Patrick Gralka, Sebastian Grottel, Joachim Staib, Karsten Schatz, Grzegorz Karol Karch, M. Hirschler, Michael Krone, Guido Reina, S. Gumhold, and Thomas Ertl. 2016 IEEE Scientific Visualization Contest Winner: Visual and Structural Analysis of Point-based Simulation Ensembles. IEEE Computer Graphics & Applications, (38)3:106-117, 2018. [PUMA: sfb716-d4-ertl visus:reina visus:kroneml visus:grottel from:guidoreina vis:ertl sfb716-a6 visus:ertl visus megamol sfb716-d3 vis-ertl visus:karchgz 2018 vis-gis from:mueller vis(us) visus:gralkapk]

Patrick Gralka, Sebastian Grottel, Joachim Staib, Karsten Schatz, Grzegorz Karol Karch, M. Hirschler, Michael Krone, Guido Reina, S. Gumhold, and Thomas Ertl. 2016 IEEE Scientific Visualization Contest Winner: Visual and Structural Analysis of Point-based Simulation Ensembles. IEEE Computer Graphics & Applications, (38)3:106-117, 2018. [PUMA: 2018 from:mueller megamol sfb716-a6 sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis vis:ertl visus visus:ertl visus:gralkapk visus:grottel visus:karchgz visus:kroneml visus:reina]

Tobias Rau, Michael Krone, Guido Reina, and Thomas Ertl. Challenges and Opportunities using Software-defined Visualization in MegaMol. 7th Workshop on Visual Analytics, Information Visualization and Scientific Visualization, 2017. [PUMA: 2017 from:mueller myown sfb716-d3 sfb716-d4 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml visus:rauts visus:reina]

Michael Krone, Karsten Schatz, Nora Hieronymus, Christoph Müller, Michael Becher, Tina Barthelmes, April Cooper, Steffen Currle, Patrick Gralka, Marcel Hlawatsch, Lisa Pietrzyk, Tobias Rau, Guido Reina, Rene Trefft, and Thomas Ertl. From Visualization Research to Public Presentation - Design and Realization of a Scientific Exhibition. Proceedings of SIGRAD 2017, 2017. [PUMA: 2017 from:mueller myown sfb716-c6 sfb716-d3 sfb716-d4 sfb716-d4-ertl sfb716-ö simtech vis(us) vis-ertl vis-gis visus visus:ertl visus:gralkapk visus:hieronna visus:hlawatml visus:kroneml visus:mueller visus:rauts visus:reina visus:schatzkn]

Michael Krone, Guido Reina, Sebastian Zahn, Tina Tremel, Carsten Bahnmüller, and Thomas Ertl. Implicit Sphere Shadow Maps. IEEE PacificVis - Visualization Notes, (4)2017. [PUMA: 2017 biovis from:mueller sfb716-d3 sfb716-d4 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml visus:reina]

Karsten Schatz, Michael Krone, Christoph Müller, Jens Schneider, Guido Reina, and Thomas Ertl. Visualization of Halo Topologies in Dark Matter Simulations. Proceedings of TopoInVis, 2017. [PUMA: 2017 from:mueller sfb716-d3 sfb716-d4 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml visus:mueller visus:reina visus:schatzkn]

Christoph Müller, Michael Krone, Katrin Scharnowski, Guido Reina, and Thomas Ertl. An Evaluation of the Utility of Large High-Resolution Displays for Comparative Scientific Visualisation. International Journal of Software and Informatics, (9)32016. [PUMA: 2016 biovis from:mueller gigapixel sfb716-d3 sfb716-d4 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml visus:mueller visus:reina visus:scharnkn vvand]

Sebastian Grottel, Guido Reina, Michael Krone, Christoph Müller, and Thomas Ertl. MegaMol - for Fun and Profit. Workshop on Visualization in Practice, 2016. [PUMA: 2016 from:mueller sfb716-d3 sfb716-d4 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:grottel visus:kroneml visus:mueller visus:reina]

Michael Krone, Florian Frieß, Katrin Scharnowski, Guido Reina, Silvia Fademrecht, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Molecular Surface Maps. IEEE Transactions on Visualization and Computer Graphics (Proceedings of the Scientific Visualization 2016), (23)12017. [PUMA: 2017 biovis from:mueller sfb716-c1 sfb716-d3 sfb716-d4 sfb716-d4-ertl sfb716-d4-pleiss sfbtrr161 vis(us) vis-ertl vis-gis visus visus:ertl visus:friessfn visus:kroneml visus:pleissjn visus:reina visus:scharnkn] URL

Finian Mwalongo, Michael Krone, Michael Becher, Guido Reina, and Thomas Ertl. GPU-based Remote Visualization of Dynamic Molecular Data on the Web. Graphical Models, (88)Elsevier, 2016. [PUMA: visus visus:mwalonfn vis-ertl sfb716-d4-ertl visus:reina sfb716-d3 visus:kroneml vis(us) visus:ertl from:mueller 2016 vis-gis biovis] URL

Finian Mwalongo, Michael Krone, Guido Reina, and Thomas Ertl. State-of-the-Art Report in Web-based Visualization. Computer Graphics Forum, (35)3Whiley, 2016. [PUMA: visus visus:mwalonfn vis-ertl sfb716-d4-ertl visus:reina sfb716-d3 visus:kroneml vis(us) visus:ertl from:mueller 2016 vis-gis] URL

Christoph Müller, Michael Krone, Katrin Scharnowski, Guido Reina, and Thomas Ertl. On the Utility of Large High-Resolution Displays for Comparative Scientific Visualisation. International Symposium on Visual Information Communication and Interaction (VINCI), (8)ACM, 2015. [PUMA: visus:scharnkn visus gigapixel vis-ertl visus:mueller sfb716-d4-ertl vvand visus:reina sfb716-d3 visus:kroneml vis(us) visus:ertl 2015 from:mueller vis-gis biovis] URL

Michael Krone, Christoph Müller, Thomas Ertl, Daniel Kauker, Augusto Cravo Silva, Diana Salsa, Manuel Gräber, and Manuela Kallert. Remote Rendering and User Interaction on Mobile Devices for Scientific Visualization. International Symposium on Visual Information Communication and Interaction (VINCI), (8)ACM, 2015. [PUMA: visus visus:kaukerdl vis-ertl visus:mueller sfb716-d4-ertl visus:kroneml vis(us) visus:ertl 2015 from:mueller vis-gis biovis] URL

Finian Mwalongo, Michael Krone, Michael Becher, Guido Reina, and Thomas Ertl. Remote Visualization of Dynamic Molecular Data using WebGL. In ACM (Eds.), International Conference on 3D Web Technology (Web3D), (20)2015. [PUMA: visus visus:mwalonfn vis-ertl sfb716-d4-ertl visus:reina sfb716-d3 visus:kroneml vis(us) visus:ertl 2015 from:mueller vis-gis biovis] URL

Kai Lawonn, Michael Krone, Thomas Ertl, and Bernhard Preim. On the Reproducibility of Line Integral Convolution for Real-Time Illustration of Molecular Surface Shape and Salient Regions. EuroRV3: EuroVis Workshop on Reproducibility, Verification, and Validation in Visualization, (3)2015. [PUMA: visus vis-ertl sfb716-d4-ertl visus:kroneml vis(us) visus:ertl 2015 from:mueller vis-gis biovis] URL

Katrin Scharnowski, Michael Krone, Guido Reina, and Thomas Ertl. On the Reproducibility of our Biomolecular Visualization. In W. Aigner, P. Rosenthal, and C. Scheidegger (Eds.), EuroRV3: EuroVis Workshop on Reproducibility, Verification, and Validation in Visualization, (3)The Eurographics Association, 2015. [PUMA: visus:scharnkn visus vis-ertl sfb716-d4-ertl visus:reina sfb716-d3 visus:kroneml vis(us) visus:ertl 2015 from:mueller vis-gis biovis] URL

Benjamin Rau, Florian Frieß, Michael Krone, Christoph Müller, and Thomas Ertl. Enhancing Visualization of Molecular Simulations using Sonification. International Workshop on Virtual and Augmented Reality for Molecular Science (VARMS@IEEEVR), (1)IEEE, 2015. [PUMA: visus vis-ertl visus:mueller sfb716-d4-ertl vvand visus:kroneml vis(us) visus:ertl 2015 from:mueller vis-gis biovis] URL

Sebastian Grottel, Michael Krone, Christoph Müller, Guido Reina, and Thomas Ertl. MegaMol – A Prototyping Framework for Particle-based Visualization. IEEE Transactions on Visualization and Computer Graphics, (21)2IEEE, 2015. [PUMA: visus visus:grottel gigapixel vis-ertl visus:mueller sfb716-d4-ertl vvand visus:reina sfb716 sfb716-d3 visus:kroneml vis(us) visus:ertl 2015 from:mueller vis-gis biovis] URL

Finian Mwalongo, Michael Krone, Grzegorz Karol Karch, Michael Becher, Guido Reina, and Thomas Ertl. Visualization of Molecular Structures using State-of-the-Art Techniques in WebGL. International Conference on 3D Web Technology (Web3D'14), (19)2014. [PUMA: visus visus:mwalonfn vis-ertl sfb716-d4-ertl visus:reina visus:karchgz sfb716-d3 visus:kroneml vis(us) visus:ertl from:mueller 2014 vis-gis biovis] URL

Michael Krone, Markus Huber, Katrin Scharnowski, Manuel Hirschler, Daniel Kauker, Guido Reina, Ulrich Nieken, Daniel Weiskopf, and Thomas Ertl. Evaluation of Visualizations for Interface Analysis of SPH. EuroVis 2014 Short Papers, (3)2014. [PUMA: visus:scharnkn visus visus:huberms volume-visualisation sfb716-a6 visus:kaukerdl sfb716-d5 vis-ertl visus:hirschml sfb716-d4-ertl visus:weiskopf visus:reina visus:niekenuh sfb716-d3 visus:kroneml vis(us) visus:ertl from:mueller 2014 vis-gis] URL

Kai Lawonn, Michael Krone, Thomas Ertl, and Bernhard Preim. Line Integral Convolution for Real-Time Illustration of Molecular Surface Shape and Salient Regions. Computer Graphics Forum, (33)32014. [PUMA: visus vis-ertl sfb716-d4-ertl visus:kroneml vis(us) visus:ertl from:mueller 2014 vis-gis biovis] URL

Katrin Scharnowski, Michael Krone, Guido Reina, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Comparative Visualization of Molecular Surfaces Using Deformable Models. Computer Graphics Forum, (33)32014. [PUMA: visus:scharnkn visus vis-ertl sfb716-d4-ertl visus:reina sfb716-c1 visus:pleissjn sfb716-d3 visus:kroneml visus:kulschts vis(us) visus:ertl from:mueller 2014 vis-gis biovis] URL

Thomas Ertl, Michael Krone, Stefan Kesselheim, Katrin Scharnowski, Guido Reina, and Christian Holm. Visual Analysis for Space-Time Aggregation of Biomolecular Simulations. In Royal Society for Chemistry (Eds.), Faraday Discussions, (169)2014. [PUMA: visus:scharnkn visus:holmcn visus volume-visualisation visus:kesselsn sfb716-c5 vis-ertl sfb716-d4-ertl visus:reina sfb716-d3 visus:kroneml vis(us) visus:ertl from:mueller 2014 vis-gis biovis] URL

Michael Krone, Daniel Kauker, Guido Reina, and Thomas Ertl. Visual Analysis of Dynamic Protein Cavities and Binding Sites. IEEE PacificVis - Visualization Notes, (1)2014. [PUMA: visus visus:kaukerdl vis-ertl sfb716-d4-ertl visus:reina sfb716-d3 visus:kroneml vis(us) visus:ertl from:mueller 2014 vis-gis biovis] URL

Daniel Kauker, Michael Krone, Alexandros Panagiotidis, Guido Reina, and Thomas Ertl. Evaluation of per-pixel linked lists for distributed rendering and comparative analysis. In Fabrizio Lamberti, and Andrea Sanna (Eds.), Computing and Visualization in Science, (15)3Springer Berlin, 2013. [PUMA: visus visus:kaukerdl vis-ertl visus:panagias sfb716-d4-ertl visus:reina mcsimvis sfb716-d3 visus:kroneml vis(us) visus:ertl from:mueller fetol 2013 vis-gis] URL

Martin Falk, Michael Krone, and Thomas Ertl. Atomistic Visualization of Mesoscopic Whole-Cell Simulations using Ray-Casted Instancing. Computer Graphics Forum, (32)82013. [PUMA: visus visus:falkmn vis-ertl sfb716-d4-ertl visus:kroneml vis(us) visus:ertl from:mueller 2013 vis-gis biovis] URL

Katrin Scharnowski, Michael Krone, Filip Sadlo, Philipp Beck, Johannes Roth, Hans-Rainer Trebin, and Thomas Ertl. 2012 IEEE Visualization Contest Winner: Visualization of Polarization Domains in Barium Titanate. IEEE Computer Graphics & Applications, (33)52013. [PUMA: visus:beckpp visus:scharnkn visus visus:sadlo simtech vis-ertl visus:trebinhr sfb716-d4-ertl sfb716-b1 visus:rothjs visus:kroneml vis(us) visus:ertl from:mueller 2013 vis-gis] URL

Michael Krone, Guido Reina, Christoph Schulz, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Interactive Extraction and Tracking of Biomolecular Surfaces Features. Computer Graphics Forum, (32)32013. [PUMA: visus vis-ertl sfb716-d4-ertl visus:reina sfb716-c1 visus:pleissjn sfb716-d3 visus:kroneml visus:schulzch visus:kulschts vis(us) visus:ertl from:mueller 2013 vis-gis] URL

Daniel Kauker, Michael Krone, Alexandros Panagiotidis, Guido Reina, and Thomas Ertl. Rendering Molecular Surfaces using Order-Independent Transparency. In Eurographics Association (Eds.), Eurographics Symposium on Parallel Graphics and Visualization (EGPGV), (13)2013. [PUMA: visus visus:kaukerdl vis-ertl visus:panagias sfb716-d4-ertl visus:reina mcsimvis sfb716-d3 visus:kroneml vis(us) visus:ertl from:mueller fetol 2013 vis-gis] URL

Martin Falk, Michael Krone, and Thomas Ertl. Atomistic Visualization of Mesoscopic Whole-Cell Simulations. EG Workshop on Visual Computing for Biology and Medicine (VCBM), 2012. [PUMA: visus visus:falkmn vis-ertl sfb716-d4-ertl visus:kroneml vis(us) visus:ertl from:mueller 2012 vis-gis biovis] URL

Michael Krone, John E. Stone, Thomas Ertl, and Klaus Schulten. Fast Visualization of Gaussian Density Surfaces for Molecular Dynamics and Particle System Trajectories. EuroVis 2012 Short Papers, (1)2012. [PUMA: visus volume-visualisation vis-ertl sfb716-d4-ertl visus:kroneml vis(us) visus:ertl from:mueller 2012 vis-gis biovis] URL

Sebastian Grottel, Michael Krone, Katrin Scharnowski, and Thomas Ertl. Object-Space Ambient Occlusion for Molecular Dynamics. Proceedings of IEEE Pacific Visualization Symposium 2012, 2012. [PUMA: visus:scharnkn visus visus:grottel vis-ertl sfb716-d4-ertl sfb716-d3 visus:kroneml vis(us) visus:ertl from:mueller 2012 vis-gis] URL

Bertram Thomaß, Jonathan Walter, Michael Krone, Hans Hasse, and Thomas Ertl. Interactive Exploration of Polymer-Solvent Interactions. International Workshop on Vision, Modeling and Visualization, (16)2011. [PUMA: visus visus:thomasbm vis-ertl sfb716-d4-ertl visus:walterjn sfb716-d3 visus:kroneml visus:hassehs vis(us) visus:ertl 2011 from:mueller vis-gis] URL

Michael Krone, Sebastian Grottel, and Thomas Ertl. Parallel Contour-Buildup Algorithm for the Molecular Surface. Proceedings of IEEE Symposium on Biological Data Visualization (biovis'11), 2011. [PUMA: visus visus:grottel vis-ertl sfb716-d4-ertl sfb716-d3 visus:kroneml vis(us) visus:ertl 2011 from:mueller vis-gis biovis] URL

Michael Krone, Katrin Bidmon, and Thomas Ertl. Interactive Visualization of Molecular Surface Dynamics. IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization / Information Visualization 2009), (15)62009. [PUMA: visus 2009 vis-ertl sfb716-d4-ertl visus:kroneml vis(us) visus:ertl from:mueller visus:bidmon vis-gis biovis] URL

Michael Krone, Martin Falk, Sascha Rehm, Jürgen Pleiss, and Thomas Ertl. Interactive Exploration of Protein Cavities. Computer Graphics Forum, (30)32011. [PUMA: visus:rehmsa visus visus:falkmn vis-ertl sfb716-d4-ertl sfb716-c1 visus:pleissjn visus:kroneml vis(us) visus:ertl 2011 from:mueller vis-gis biovis] URL

Matthieu Chavent, Bruno Lévy, Michael Krone, Katrin Bidmon, Jean-Philippe Nominé, Thomas Ertl, and Marc Baaden. GPU-powered tools boost molecular visualization. Briefings in Bioinformatics, (12)6Oxford Press, 2011. [PUMA: visus vis-ertl sfb716-d4-ertl visus:kroneml vis(us) visus:ertl 2011 from:mueller visus:bidmon vis-gis] URL

Michael Krone, Carsten Dachsbacher, and Thomas Ertl. Parallel Computation and Interactive Visualization of Time-varying Solvent Excluded Surfaces. International Conference On Bioinformatics and Computational Biology, (2010)ACM, 2010. [PUMA: vis-vc visus vis-ertl sfb716-d4-ertl visus:dachsbcn visus:kroneml vis(us) visus:ertl from:mueller 2010 vis-gis biovis] URL

Michael Krone, Katrin Bidmon, and Thomas Ertl. GPU-based Visualisation of Protein Secondary Structure. Proceedings of TP.CG'08, 2008. [PUMA: 2008 visus vis-ertl sfb716-d4-ertl visus:kroneml vis(us) visus:ertl from:mueller visus:bidmon vis-gis biovis] URL