Extensive eccentric contractions in intact cardiac trabeculae: revealing compelling differences in contractile behaviour compared to skeletal muscles. Proceedings of the Royal Society B, (286)1903:20190719, 2019. [PUMA: EXC2075 PN2 PN2A-1 selected] URL
Performance of two complementary machine-learned potentials in modelling chemically complex systems. NPJ Computational Materials, (9):129, 2023. [PUMA: EXC2075 PN2 PN2-3(1) PN2-3A PN3 PN3-4 PN6 PN6-6 PN6A-1 selected] URL
Ultrastructural and kinetic evidence support that thick filaments slide through the Z-disc. Interface : journal of the Royal Society, (19)197:20220642, The Royal Society, 2022. [PUMA: PN2 PN2A-1 EXC2075 selected] URL
On robust discretization methods for poroelastic problems: Numerical examples and counter-examples. Examples and Counterexamples, (2):100087, Elsevier BV, November 2022. [PUMA: PN2-2A PN2 EXC2075 selected] URL
Stress-induced TRAILR2 expression overcomes TRAIL resistance in cancer cell spheroids. Cell Death & Differentiation, 27:3037–3052, 2020. [PUMA: PN2 EXC2075 selected] URL
Non-local three phase lag bio thermal modeling of skin tissue and experimental evaluation. International Communications in Heat and Mass Transfer, (149):107146, 2023. [PUMA: PN2-2A PN2 PN2-2(II) EXC2075 selected] URL
DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation. Nature Communications, (11)1:1-15, Springer Science and Business Media LLC, 2020. [PUMA: PN2 PN2-9 EXC2075 PN2-1B selected]
The FLAME-accelerated signalling tool (FaST) for facile parallelisation of flexible agent-based models of cell signalling. npj Systems Biology and Applications, (6)1:10--, 2020. [PUMA: PN2 EXC2075 selected] URL
A Multiscale and Multiphase Model of Function-Perfusion Growth Processes in the Human Liver. PAMM, (20)1Wiley, January 2021. [PUMA: PN2-2A PN2 EXC2075] URL
The apoptosome molecular timer synergises with XIAP to suppress apoptosis execution and contributes to prognosticating survival in colorectal cancer. Cell Death & Differentiation, 27:2828–2842, 2020. [PUMA: PN2 EXC2075 PN2-1A selected] URL
Reconstructing temporal and spatial dynamics from single-cell pseudotime using prior knowledge of real scale cell densities. Scientific Reports, (10)1:3619, Nature Publishing Group, December 2020. [PUMA: PN2 EXC2075 selected] URL
EnzymeML—a data exchange format for biocatalysis and enzymology. The FEBS Journal, (289)19:5864--5874, John Wiley & Sons, Ltd, October 2022. [PUMA: PN2-6(II) PN2 EXC2075 selected] URL
Power Amplification Increases With Contraction Velocity During Stretch-Shortening Cycles of Skinned Muscle Fibers. Frontiers in Physiology, (12)Frontiers Media SA, March 2021. [PUMA: PN2 PN2A-1 EXC2075 selected] URL
Cross-Bridges and Sarcomeric Non-cross-bridge Structures Contribute to Increased Work in Stretch-Shortening Cycles. In Tobias Siebert (Eds.), Frontiers in Physiology, (11)Frontiers Media SA, July 2020. [PUMA: PN2 PN2A-1 EXC2075 selected] URL
Hepatectomy-Induced Alterations in Hepatic Perfusion and Function - Toward Multi-Scale Computational Modeling for a Better Prediction of Post-hepatectomy Liver Function. Frontiers in Physiology, (12)Frontiers Media SA, November 2021. [PUMA: PN2-2A PN2 EXC2075 selected] URL
An inverse transformation algorithm to infer parameter distributions from population snapshot data. In Ioannis P. Androulakis Maria Klapa, Daniel P. Howsmon (Eds.), IFAC-PapersOnLine, (55)23:86-91, 2022. [PUMA: PN2 PN2-9 EXC2075 PN2-1B selected] URL
Semi-automated Data-driven FE Mesh Generation and Inverse Parameter Identification for a Multiscale and Multiphase Model of Function-Perfusion Processes in the Liver. PAMM, (21)12021. [PUMA: PN2-2A PN2 misc EXC2075]
Quasi-Entropy Closure: A Fast and Reliable Approach to Close the Moment Equations of the Chemical Master Equation. Bioinformatics, (38)18:4352-4359, Oxford University Press, 2022. [PUMA: PN2 PN2-9 PN5 EXC2075 PN2-1B merged selected]
A three filament mechanistic model of musculotendon force and impedance. bioRxiv, Cold Spring Harbor Laboratory, 2023. [PUMA: PN2 PNX EXC2075] URL
Melanoma 2.0. Skin cancer as a paradigm for emerging diagnostic technologies, computational modelling and artificial intelligence. Briefings in Bioinformatics, October 2022. [PUMA: PN2 EXC2075 PN2-1A selected] URL