Publications

Naif Alharbi, Mohammad Alharbi, Xavier Martinez, Michael Krone, Alexander Rose, Marc Baaden, Robert S. Laramee, and Matthieu Chavent. Molecular Visualization of Computational Biology Data: A Survey of Surveys. EuroVis 2017 Short Papers, 2017. [PUMA: sfb716-d4-ertl vis-ertl biovis sfb716-d4 visus:kroneml 2017 from:mueller vis(us) visus] URL

Naif Alharbi, Mohammad Alharbi, Xavier Martinez, Michael Krone, Alexander Rose, Marc Baaden, Robert S. Laramee, and Matthieu Chavent. Molecular Visualization of Computational Biology Data: A Survey of Surveys. EuroVis 2017 Short Papers, 2017. [PUMA: sfb716-d4-ertl vis-ertl biovis sfb716-d4 visus:kroneml 2017 vis(us) visus] URL

Christopher Bartlett, Soo Cheong, Liping Hou, Jesse Paquette, Pek Lum, Guenter Jaeger, Florian Battke, Corinna Vehlow, Julian Heinrich, Kay Nieselt, Ryo Sakai, Jan Aerts, and William Ray. An eQTL biological data visualization challenge and approaches from the visualization community. In BMC Bioinformatics (Eds.), BMC Bioinformatics, (2012)132012. [PUMA: biovis bioinformatik visus:heinrijn vis(us) 2012 visus:vehlowca visus] URL

Thomas Ertl, Michael Krone, Stefan Kesselheim, Katrin Scharnowski, Guido Reina, and Christian Holm. Visual Analysis for Space-Time Aggregation of Biomolecular Simulations. In Royal Society for Chemistry (Eds.), Faraday Discussions, (169)2014. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:holmcn visus:kesselsn visus:ertl visus sfb716-c5 sfb716-d3 vis-ertl volume-visualisation vis-gis vis(us) 2014 visus:scharnkn] URL

Thomas Ertl, Michael Krone, Stefan Kesselheim, Katrin Scharnowski, Guido Reina, and Christian Holm. Visual Analysis for Space-Time Aggregation of Biomolecular Simulations. In Royal Society for Chemistry (Eds.), Faraday Discussions, (169)2014. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:holmcn visus:kesselsn visus:ertl visus sfb716-c5 sfb716-d3 vis-ertl volume-visualisation vis-gis from:mueller vis(us) 2014 visus:scharnkn] URL

Martin Falk. Visualization and mesoscopic simulation in systems biology. 2013. [PUMA: vis-ertl biovis simtech vis-gis vis(us) 2013 visus:falkmn visus]

Martin Falk, Markus Daub, Guido Schneider, and Thomas Ertl. Modeling and Visualization of Receptor Clustering on the Cellular Membrane. IEEE Symposium on Biological Data Visualization (BioVis 2011), 2011. [PUMA: vis-ertl biovis vis-gis vis(us) 2011 visus:ertl visus:falkmn visus] URL

Martin Falk, Sebastian Grottel, and Thomas Ertl. Interactive Image-Space Volume Visualization for Dynamic Particle Simulations. Proceedings of The Annual SIGRAD Conference, Linköping University Electronic Press, 2010. [PUMA: biovis visus:grottel visus:ertl visus:falkmn 2010 visus sfb716-d3 vis-ertl volume-visualisation vis(us)]

Martin Falk, Sebastian Grottel, and Thomas Ertl. Interactive Image-Space Volume Visualization for Dynamic Particle Simulations. Proceedings of The Annual SIGRAD Conference, Linköping University Electronic Press, 2010. [PUMA: biovis visus:grottel visus:falkmn visus:ertl 2010 visus sfb716-d3 vis-ertl volume-visualisation from:mueller vis(us)]

Martin Falk, Michael Klann, Michael Ott, Heinz Koeppl, and Thomas Ertl. Parallelized Agent-based Simulation on CPU and Graphics Hardware for Spatial and Stochastic Models in Biology. In François Fages (Eds.), International Conference on Computational Methods in Systems Biology (CMSB 2011), ACM, 2011. [PUMA: vis-ertl biovis vis-gis vis(us) 2011 visus:ertl visus:falkmn visus] URL

Martin Falk, Michael Klann, Matthias Reuss, and Thomas Ertl. Visualization of Signal Transduction Processes in the Crowded Environment of the Cell. IEEE Pacific Visualization Symposium (PacificVis 2009), 2009. [PUMA: 2009 vis-ertl biovis vis-gis vis(us) visus:ertl visus:falkmn visus] URL

Martin Falk, Michael Klann, Matthias Reuss, and Thomas Ertl. 3D Visualization of Concentrations from Stochastic Agent-based Signal Transduction Simulations. IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI '10), 2010. [PUMA: vis-ertl biovis vis(us) visus:ertl visus:falkmn 2010 visus] URL

Martin Falk, Michael Krone, and Thomas Ertl. Atomistic Visualization of Mesoscopic Whole-Cell Simulations. EG Workshop on Visual Computing for Biology and Medicine (VCBM), 2012. [PUMA: sfb716-d4-ertl biovis visus:kroneml 2012 visus:falkmn visus:ertl visus vis-ertl vis-gis from:mueller vis(us)] URL

Martin Falk, Michael Krone, and Thomas Ertl. Atomistic Visualization of Mesoscopic Whole-Cell Simulations using Ray-Casted Instancing. Computer Graphics Forum, (32)82013. [PUMA: sfb716-d4-ertl biovis visus:kroneml 2013 visus:ertl visus:falkmn visus vis-ertl vis-gis vis(us)] URL

Martin Falk, Michael Krone, and Thomas Ertl. Atomistic Visualization of Mesoscopic Whole-Cell Simulations. EG Workshop on Visual Computing for Biology and Medicine (VCBM), 2012. [PUMA: sfb716-d4-ertl biovis visus:kroneml 2012 visus:ertl visus:falkmn visus vis-ertl vis-gis vis(us)] URL

Martin Falk, Michael Krone, and Thomas Ertl. Atomistic Visualization of Mesoscopic Whole-Cell Simulations using Ray-Casted Instancing. Computer Graphics Forum, (32)82013. [PUMA: sfb716-d4-ertl biovis visus:kroneml 2013 visus:falkmn visus:ertl visus vis-ertl vis-gis from:mueller vis(us)] URL

Sebastian Grottel, Michael Krone, Christoph Müller, Guido Reina, and Thomas Ertl. MegaMol – A Prototyping Framework for Particle-based Visualization. IEEE Transactions on Visualization and Computer Graphics, (21)2IEEE, 2015. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:grottel vvand sfb716 visus:ertl visus:mueller visus gigapixel sfb716-d3 vis-ertl vis-gis 2015 from:mueller vis(us)] URL

Sebastian Grottel, Michael Krone, Christoph Müller, Guido Reina, and Thomas Ertl. MegaMol – A Prototyping Framework for Particle-based Visualization. IEEE Transactions on Visualization and Computer Graphics, (21)2IEEE, 2015. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:grottel vvand sfb716 visus:ertl visus:mueller visus gigapixel sfb716-d3 vis-ertl vis-gis 2015 vis(us)] URL

Jan Hasenauer, Julian Heinrich, Malgorzata Doszczak, Peter Scheurich, and Frank Allgöwer. Visualization methods and support vector machines as tools for determining markers in models of heterogeneous populations: Proapoptotic signaling as a case study. Proceedings Workshop on Computational Systems Biology, 2011. [PUMA: biovis visus:heinrijn vis(us) 2011 visus]

Julian Heinrich, Michael Krone, Daniel Weiskopf, and Seán O'Donoghue. Visualising Intrinsic Disorder and Conformational Variation in Protein Ensembles. In Royal Society for Chemistry (Eds.), Faraday Discussions, (169)2014. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus sfb716-d5 vis-ertl visus:weiskopf visus:heinrijn volume-visualisation vis(us) 2014] URL

Julian Heinrich, Michael Krone, Daniel Weiskopf, and Seán O'Donoghue. Visualising Intrinsic Disorder and Conformational Variation in Protein Ensembles. In Royal Society for Chemistry (Eds.), Faraday Discussions, (169)2014. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus sfb716-d5 vis-ertl visus:weiskopf visus:heinrijn volume-visualisation from:mueller vis(us) 2014] URL

Julian Heinrich, Julian Seifert, Michael Burch, and Daniel Weiskopf. BiCluster Viewer: A Visualization Tool for Analyzing Gene Expression Data. Proceedings of International Symposium on Visual Computing (ISVC), Springer, 2011. [PUMA: biovis visus:weiskopf visus:heinrijn vis(us) visus:burchml 2011 visus]

Julian Heinrich, Corinna Vehlow, Florian Battke, Guenter Jaeger, Daniel Weiskopf, and Kay Nieselt. iHAT: interactive Hierarchical Aggregation Table for Genetic Association Data. In BMC Bioinformatics (Eds.), BMC Bioinformatics, (2012)132012. [PUMA: biovis bioinformatik visus:weiskopf visus:heinrijn vis(us) 2012 visus:vehlowca visus] URL

Pedro Hermosilla, Michael Krone, Victor Guallar, Pere-Pau Vázquez, Àlvar Vinacua, and Timo Ropinski. Interactive GPU-based Generation of Solvent Excluded Surfaces. The Visual Computer (Proceedings of CGI'2017), (33)6Springer, 2017. [PUMA: sfb716-d4-ertl vis-ertl biovis sfb716-d4 visus:kroneml 2017 vis(us) visus] URL

Pedro Hermosilla, Michael Krone, Victor Guallar, Pere-Pau Vázquez, Àlvar Vinacua, and Timo Ropinski. Interactive GPU-based Generation of Solvent Excluded Surfaces. The Visual Computer (Proceedings of CGI'2017), (33)6Springer, 2017. [PUMA: sfb716-d4-ertl vis-ertl biovis sfb716-d4 visus:kroneml 2017 from:mueller vis(us) visus] URL

Barbora Kozlíková, Michael Krone, Martin Falk, Norbert Lindow, Marc Baaden, Daniel Baum, Ivan Viola, Julius Parulek, and Hans-Christian Hege. Visualization of Molecular Structure: State of the Art Revisited. Computer Graphics Forum, 2016. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:falkmn visus sfb716-d4 vis-ertl 2016 vis(us)] URL

Barbora Kozlíková, Michael Krone, Martin Falk, Norbert Lindow, Marc Baaden, Daniel Baum, Ivan Viola, Julius Parulek, and Hans-Christian Hege. Visualization of Molecular Structure: State of the Art Revisited. Computer Graphics Forum, 2016. [PUMA: sfb716-d4-ertl vis-ertl biovis sfb716-d4 visus:kroneml 2016 from:mueller vis(us) visus:falkmn visus] URL

Barbora Kozlíková, Michael Krone, Norbert Lindow, Martin Falk, Marc Baaden, Daniel Baum, Ivan Viola, Julius Parulek, and Hans-Christian Hege. Visualization of Molecular Structure: State of the Art. Eurographics Conference on Visualization (EuroVis) - STARs, 2015. [PUMA: sfb716-d4-ertl vis-ertl biovis visus:kroneml 2015 from:mueller vis(us) visus:falkmn visus] URL

Barbora Kozlíková, Michael Krone, Norbert Lindow, Martin Falk, Marc Baaden, Daniel Baum, Ivan Viola, Julius Parulek, and Hans-Christian Hege. Visualization of Molecular Structure: State of the Art. Eurographics Conference on Visualization (EuroVis) - STARs, 2015. [PUMA: sfb716-d4-ertl vis-ertl biovis visus:kroneml 2015 vis(us) visus:falkmn visus] URL

Michael Krone. Interactive Visual Analysis of Biomolecular Simulations. 2015. [PUMA: sfb716-d4-ertl vis-ertl biovis sfb716-d4 visus:kroneml 2015 vis(us) visus] URL

Michael Krone. Interactive Visual Analysis of Biomolecular Simulations. 2015. [PUMA: sfb716-d4-ertl vis-ertl biovis visus:kroneml 2015 from:mueller vis(us) visus] URL

Michael Krone, Katrin Bidmon, and Thomas Ertl. Interactive Visualization of Molecular Surface Dynamics. IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization / Information Visualization 2009), (15)62009. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:ertl visus 2009 vis-ertl vis-gis vis(us) visus:bidmon] URL

Michael Krone, Katrin Bidmon, and Thomas Ertl. Interactive Visualization of Molecular Surface Dynamics. IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization / Information Visualization 2009), (15)62009. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:ertl visus 2009 vis-ertl vis-gis from:mueller vis(us) visus:bidmon] URL

Michael Krone, Katrin Bidmon, and Thomas Ertl. GPU-based Visualisation of Protein Secondary Structure. Proceedings of TP.CG'08, 2008. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:ertl visus vis-ertl 2008 vis-gis vis(us) visus:bidmon] URL

Michael Krone, Katrin Bidmon, and Thomas Ertl. GPU-based Visualisation of Protein Secondary Structure. Proceedings of TP.CG'08, 2008. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:ertl visus vis-ertl 2008 vis-gis from:mueller vis(us) visus:bidmon] URL

Michael Krone, Carsten Dachsbacher, and Thomas Ertl. Parallel Computation and Interactive Visualization of Time-varying Solvent Excluded Surfaces. International Conference On Bioinformatics and Computational Biology, (2010)ACM, 2010. [PUMA: sfb716-d4-ertl vis-vc biovis visus:kroneml visus:ertl 2010 visus:dachsbcn visus vis-ertl vis-gis vis(us)] URL

Michael Krone, Carsten Dachsbacher, and Thomas Ertl. Parallel Computation and Interactive Visualization of Time-varying Solvent Excluded Surfaces. International Conference On Bioinformatics and Computational Biology, (2010)ACM, 2010. [PUMA: sfb716-d4-ertl vis-vc biovis visus:kroneml visus:ertl 2010 visus:dachsbcn visus vis-ertl vis-gis from:mueller vis(us)] URL

Michael Krone, Martin Falk, Sascha Rehm, Jürgen Pleiss, and Thomas Ertl. Interactive Exploration of Protein Cavities. Computer Graphics Forum, (30)32011. [PUMA: sfb716-d4-ertl biovis visus:kroneml 2011 visus:falkmn visus:ertl visus:rehmsa visus vis-ertl sfb716-c1 vis-gis from:mueller vis(us) visus:pleissjn] URL

Michael Krone, Martin Falk, Sascha Rehm, Jürgen Pleiss, and Thomas Ertl. Interactive Exploration of Protein Cavities. Computer Graphics Forum, (30)32011. [PUMA: sfb716-d4-ertl biovis visus:kroneml 2011 visus:ertl visus:falkmn visus:rehmsa visus vis-ertl sfb716-c1 vis-gis vis(us) visus:pleissjn] URL

Michael Krone, Florian Frieß, Katrin Scharnowski, Guido Reina, Silvia Fademrecht, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Molecular Surface Maps. IEEE Transactions on Visualization and Computer Graphics (Proceedings of the Scientific Visualization 2016), (23)12017. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml sfbtrr161 sfb716-d4-pleiss visus:ertl visus sfb716-d3 sfb716-d4 vis-ertl visus:friessfn sfb716-c1 2017 vis-gis from:mueller vis(us) visus:pleissjn visus:scharnkn] URL

Michael Krone, Florian Frieß, Katrin Scharnowski, Guido Reina, Silvia Fademrecht, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Molecular Surface Maps. IEEE Transactions on Visualization and Computer Graphics (Proceedings of the Scientific Visualization 2016), (23)12017. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml sfbtrr161 sfb716-d4-pleiss visus:ertl visus sfb716-d3 sfb716-d4 vis-ertl visus:friessfn sfb716-c1 2017 vis-gis vis(us) visus:pleissjn visus:scharnkn] URL

Michael Krone, Florian Frieß, Katrin Scharnowski, Guido Reina, Silvia Fademrecht, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Molecular Surface Maps. IEEE Transactions on Visualization and Computer Graphics, (23)12017. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml sfbtrr161 sfb716-d4-pleiss visus:ertl visus sfb716-d3 vis-ertl visus:friessfn sfb716-c1 2017 vis-gis from:mueller vis(us) visus:pleissjn visus:scharnkn] URL

Michael Krone, Sebastian Grottel, and Thomas Ertl. Parallel Contour-Buildup Algorithm for the Molecular Surface. Proceedings of IEEE Symposium on Biological Data Visualization (biovis'11), 2011. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:grottel 2011 visus:ertl visus sfb716-d3 vis-ertl vis-gis vis(us)] URL

Michael Krone, Sebastian Grottel, and Thomas Ertl. Parallel Contour-Buildup Algorithm for the Molecular Surface. Proceedings of IEEE Symposium on Biological Data Visualization (biovis'11), 2011. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:grottel 2011 visus:ertl visus sfb716-d3 vis-ertl vis-gis from:mueller vis(us)] URL

Michael Krone, Daniel Kauker, Guido Reina, and Thomas Ertl. Visual Analysis of Dynamic Protein Cavities and Binding Sites. IEEE PacificVis - Visualization Notes, (1)2014. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:kaukerdl visus:ertl visus sfb716-d3 vis-ertl vis-gis vis(us) 2014] URL

Michael Krone, Daniel Kauker, Guido Reina, and Thomas Ertl. Visual Analysis of Dynamic Protein Cavities and Binding Sites. IEEE PacificVis - Visualization Notes, (1)2014. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:kaukerdl visus:ertl visus sfb716-d3 vis-ertl vis-gis from:mueller vis(us) 2014] URL

Michael Krone, Barbora Kozlíková, Norbert Lindow, Marc Baaden, Daniel Baum, Julius Parulek, Hans-Christian Hege, and Ivan Viola. Visual Analysis of Biomolecular Cavities: State of the Art. Computer Graphics Forum, (35)3Whiley, 2016. [PUMA: sfb716-d4-ertl vis-ertl biovis bioinformatik visus:kroneml 2016 from:mueller vis(us) visus] URL

Michael Krone, Barbora Kozlíková, Norbert Lindow, Marc Baaden, Daniel Baum, Julius Parulek, Hans-Christian Hege, and Ivan Viola. Visual Analysis of Biomolecular Cavities: State of the Art. Computer Graphics Forum, (35)3Whiley, 2016. [PUMA: sfb716-d4-ertl vis-ertl biovis bioinformatik visus:kroneml 2016 vis(us) visus] URL

Michael Krone, Christoph Müller, Thomas Ertl, Daniel Kauker, Augusto Cravo Silva, Diana Salsa, Manuel Gräber, and Manuela Kallert. Remote Rendering and User Interaction on Mobile Devices for Scientific Visualization. International Symposium on Visual Information Communication and Interaction (VINCI), (8)ACM, 2015. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:kaukerdl visus:ertl visus:mueller visus vis-ertl vis-gis 2015 from:mueller vis(us)] URL

Michael Krone, Christoph Müller, Thomas Ertl, Daniel Kauker, Augusto Cravo Silva, Diana Salsa, Manuel Gräber, and Manuela Kallert. Remote Rendering and User Interaction on Mobile Devices for Scientific Visualization. International Symposium on Visual Information Communication and Interaction (VINCI), (8)ACM, 2015. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:kaukerdl visus:ertl visus:mueller visus vis-ertl vis-gis 2015 vis(us)] URL