Publications

Benjamin Rau, Florian Frieß, Michael Krone, Christoph Müller, and Thomas Ertl. Enhancing Visualization of Molecular Simulations using Sonification. International Workshop on Virtual and Augmented Reality for Molecular Science (VARMS@IEEEVR), (1)IEEE, 2015. [PUMA: visus vis-ertl visus:mueller sfb716-d4-ertl vvand visus:kroneml vis(us) visus:ertl 2015 from:mueller vis-gis biovis] URL

Sebastian Grottel, Michael Krone, Christoph Müller, Guido Reina, and Thomas Ertl. MegaMol – A Prototyping Framework for Particle-based Visualization. IEEE Transactions on Visualization and Computer Graphics, (21)2IEEE, 2015. [PUMA: 2015 biovis gigapixel sfb716 sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:grottel visus:kroneml visus:mueller visus:reina vvand] URL

Sebastian Grottel, Michael Krone, Christoph Müller, Guido Reina, and Thomas Ertl. MegaMol – A Prototyping Framework for Particle-based Visualization. IEEE Transactions on Visualization and Computer Graphics, (21)2IEEE, 2015. [PUMA: visus visus:grottel gigapixel vis-ertl visus:mueller sfb716-d4-ertl vvand visus:reina sfb716 sfb716-d3 visus:kroneml vis(us) visus:ertl 2015 from:mueller vis-gis biovis] URL

Finian Mwalongo, Michael Krone, Grzegorz Karol Karch, Michael Becher, Guido Reina, and Thomas Ertl. Visualization of Molecular Structures using State-of-the-Art Techniques in WebGL. International Conference on 3D Web Technology (Web3D'14), (19)2014. [PUMA: 2014 biovis sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:karchgz visus:kroneml visus:mwalonfn visus:reina] URL

Finian Mwalongo, Michael Krone, Grzegorz Karol Karch, Michael Becher, Guido Reina, and Thomas Ertl. Visualization of Molecular Structures using State-of-the-Art Techniques in WebGL. International Conference on 3D Web Technology (Web3D'14), (19)2014. [PUMA: visus visus:mwalonfn vis-ertl sfb716-d4-ertl visus:reina visus:karchgz sfb716-d3 visus:kroneml vis(us) visus:ertl from:mueller 2014 vis-gis biovis] URL

Kai Lawonn, Michael Krone, Thomas Ertl, and Bernhard Preim. Line Integral Convolution for Real-Time Illustration of Molecular Surface Shape and Salient Regions. Computer Graphics Forum, (33)32014. [PUMA: 2014 biovis sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml] URL

Kai Lawonn, Michael Krone, Thomas Ertl, and Bernhard Preim. Line Integral Convolution for Real-Time Illustration of Molecular Surface Shape and Salient Regions. Computer Graphics Forum, (33)32014. [PUMA: visus vis-ertl sfb716-d4-ertl visus:kroneml vis(us) visus:ertl from:mueller 2014 vis-gis biovis] URL

Katrin Scharnowski, Michael Krone, Guido Reina, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Comparative Visualization of Molecular Surfaces Using Deformable Models. Computer Graphics Forum, (33)32014. [PUMA: 2014 biovis sfb716-c1 sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml visus:kulschts visus:pleissjn visus:reina visus:scharnkn] URL

Katrin Scharnowski, Michael Krone, Guido Reina, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Comparative Visualization of Molecular Surfaces Using Deformable Models. Computer Graphics Forum, (33)32014. [PUMA: visus:scharnkn visus vis-ertl sfb716-d4-ertl visus:reina sfb716-c1 visus:pleissjn sfb716-d3 visus:kroneml visus:kulschts vis(us) visus:ertl from:mueller 2014 vis-gis biovis] URL

Thomas Ertl, Michael Krone, Stefan Kesselheim, Katrin Scharnowski, Guido Reina, and Christian Holm. Visual Analysis for Space-Time Aggregation of Biomolecular Simulations. In Royal Society for Chemistry (Eds.), Faraday Discussions, (169)2014. [PUMA: 2014 biovis sfb716-c5 sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:holmcn visus:kesselsn visus:kroneml visus:reina visus:scharnkn volume-visualisation] URL

Thomas Ertl, Michael Krone, Stefan Kesselheim, Katrin Scharnowski, Guido Reina, and Christian Holm. Visual Analysis for Space-Time Aggregation of Biomolecular Simulations. In Royal Society for Chemistry (Eds.), Faraday Discussions, (169)2014. [PUMA: visus:scharnkn visus:holmcn visus volume-visualisation visus:kesselsn sfb716-c5 vis-ertl sfb716-d4-ertl visus:reina sfb716-d3 visus:kroneml vis(us) visus:ertl from:mueller 2014 vis-gis biovis] URL

Michael Krone, Daniel Kauker, Guido Reina, and Thomas Ertl. Visual Analysis of Dynamic Protein Cavities and Binding Sites. IEEE PacificVis - Visualization Notes, (1)2014. [PUMA: 2014 biovis sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kaukerdl visus:kroneml visus:reina] URL

Michael Krone, Daniel Kauker, Guido Reina, and Thomas Ertl. Visual Analysis of Dynamic Protein Cavities and Binding Sites. IEEE PacificVis - Visualization Notes, (1)2014. [PUMA: visus visus:kaukerdl vis-ertl sfb716-d4-ertl visus:reina sfb716-d3 visus:kroneml vis(us) visus:ertl from:mueller 2014 vis-gis biovis] URL

Martin Falk. Visualization and mesoscopic simulation in systems biology. 2013. [PUMA: 2013 biovis simtech vis(us) vis-ertl vis-gis visus visus:falkmn]

Martin Falk, Michael Krone, and Thomas Ertl. Atomistic Visualization of Mesoscopic Whole-Cell Simulations using Ray-Casted Instancing. Computer Graphics Forum, (32)82013. [PUMA: 2013 biovis sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:falkmn visus:kroneml] URL

Martin Falk, Michael Krone, and Thomas Ertl. Atomistic Visualization of Mesoscopic Whole-Cell Simulations using Ray-Casted Instancing. Computer Graphics Forum, (32)82013. [PUMA: visus visus:falkmn vis-ertl sfb716-d4-ertl visus:kroneml vis(us) visus:ertl from:mueller 2013 vis-gis biovis] URL

Martin Falk, Michael Krone, and Thomas Ertl. Atomistic Visualization of Mesoscopic Whole-Cell Simulations. EG Workshop on Visual Computing for Biology and Medicine (VCBM), 2012. [PUMA: 2012 biovis sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:falkmn visus:kroneml] URL

Martin Falk, Michael Krone, and Thomas Ertl. Atomistic Visualization of Mesoscopic Whole-Cell Simulations. EG Workshop on Visual Computing for Biology and Medicine (VCBM), 2012. [PUMA: visus visus:falkmn vis-ertl sfb716-d4-ertl visus:kroneml vis(us) visus:ertl from:mueller 2012 vis-gis biovis] URL

Michael Krone, John E. Stone, Thomas Ertl, and Klaus Schulten. Fast Visualization of Gaussian Density Surfaces for Molecular Dynamics and Particle System Trajectories. EuroVis 2012 Short Papers, (1)2012. [PUMA: 2012 biovis sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml volume-visualisation] URL

Michael Krone, John E. Stone, Thomas Ertl, and Klaus Schulten. Fast Visualization of Gaussian Density Surfaces for Molecular Dynamics and Particle System Trajectories. EuroVis 2012 Short Papers, (1)2012. [PUMA: visus volume-visualisation vis-ertl sfb716-d4-ertl visus:kroneml vis(us) visus:ertl from:mueller 2012 vis-gis biovis] URL

Martin Falk, Michael Klann, Michael Ott, Heinz Koeppl, and Thomas Ertl. Parallelized Agent-based Simulation on CPU and Graphics Hardware for Spatial and Stochastic Models in Biology. In François Fages (Eds.), International Conference on Computational Methods in Systems Biology (CMSB 2011), ACM, 2011. [PUMA: 2011 biovis vis(us) vis-ertl vis-gis visus visus:ertl visus:falkmn] URL

Martin Falk, Markus Daub, Guido Schneider, and Thomas Ertl. Modeling and Visualization of Receptor Clustering on the Cellular Membrane. IEEE Symposium on Biological Data Visualization (BioVis 2011), 2011. [PUMA: 2011 biovis vis(us) vis-ertl vis-gis visus visus:ertl visus:falkmn] URL

Michael Krone, Sebastian Grottel, and Thomas Ertl. Parallel Contour-Buildup Algorithm for the Molecular Surface. Proceedings of IEEE Symposium on Biological Data Visualization (biovis'11), 2011. [PUMA: 2011 biovis sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:grottel visus:kroneml] URL

Michael Krone, Sebastian Grottel, and Thomas Ertl. Parallel Contour-Buildup Algorithm for the Molecular Surface. Proceedings of IEEE Symposium on Biological Data Visualization (biovis'11), 2011. [PUMA: visus visus:grottel vis-ertl sfb716-d4-ertl sfb716-d3 visus:kroneml vis(us) visus:ertl 2011 from:mueller vis-gis biovis] URL

Michael Krone, Katrin Bidmon, and Thomas Ertl. Interactive Visualization of Molecular Surface Dynamics. IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization / Information Visualization 2009), (15)62009. [PUMA: 2009 biovis sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:bidmon visus:ertl visus:kroneml] URL

Michael Krone, Katrin Bidmon, and Thomas Ertl. Interactive Visualization of Molecular Surface Dynamics. IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization / Information Visualization 2009), (15)62009. [PUMA: visus 2009 vis-ertl sfb716-d4-ertl visus:kroneml vis(us) visus:ertl from:mueller visus:bidmon vis-gis biovis] URL

Martin Falk, Michael Klann, Matthias Reuss, and Thomas Ertl. Visualization of Signal Transduction Processes in the Crowded Environment of the Cell. IEEE Pacific Visualization Symposium (PacificVis 2009), 2009. [PUMA: 2009 biovis vis(us) vis-ertl vis-gis visus visus:ertl visus:falkmn] URL

Michael Krone, Martin Falk, Sascha Rehm, Jürgen Pleiss, and Thomas Ertl. Interactive Exploration of Protein Cavities. Computer Graphics Forum, (30)32011. [PUMA: 2011 biovis sfb716-c1 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:falkmn visus:kroneml visus:pleissjn visus:rehmsa] URL

Michael Krone, Martin Falk, Sascha Rehm, Jürgen Pleiss, and Thomas Ertl. Interactive Exploration of Protein Cavities. Computer Graphics Forum, (30)32011. [PUMA: visus:rehmsa visus visus:falkmn vis-ertl sfb716-d4-ertl sfb716-c1 visus:pleissjn visus:kroneml vis(us) visus:ertl 2011 from:mueller vis-gis biovis] URL

Michael Krone, Carsten Dachsbacher, and Thomas Ertl. Parallel Computation and Interactive Visualization of Time-varying Solvent Excluded Surfaces. International Conference On Bioinformatics and Computational Biology, (2010)ACM, 2010. [PUMA: 2010 biovis sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:dachsbcn visus:ertl visus:kroneml vis-vc] URL

Michael Krone, Carsten Dachsbacher, and Thomas Ertl. Parallel Computation and Interactive Visualization of Time-varying Solvent Excluded Surfaces. International Conference On Bioinformatics and Computational Biology, (2010)ACM, 2010. [PUMA: vis-vc visus vis-ertl sfb716-d4-ertl visus:dachsbcn visus:kroneml vis(us) visus:ertl from:mueller 2010 vis-gis biovis] URL

Michael Krone, Katrin Bidmon, and Thomas Ertl. GPU-based Visualisation of Protein Secondary Structure. Proceedings of TP.CG'08, 2008. [PUMA: 2008 biovis sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:bidmon visus:ertl visus:kroneml] URL

Michael Krone, Katrin Bidmon, and Thomas Ertl. GPU-based Visualisation of Protein Secondary Structure. Proceedings of TP.CG'08, 2008. [PUMA: 2008 visus vis-ertl sfb716-d4-ertl visus:kroneml vis(us) visus:ertl from:mueller visus:bidmon vis-gis biovis] URL