Publications

Martin Falk, Michael Klann, Matthias Reuss, and Thomas Ertl. Visualization of Signal Transduction Processes in the Crowded Environment of the Cell. IEEE Pacific Visualization Symposium (PacificVis 2009), 2009. [PUMA: 2009 vis-ertl biovis vis-gis vis(us) visus:ertl visus:falkmn visus] URL

Finian Mwalongo, Michael Krone, Grzegorz Karol Karch, Michael Becher, Guido Reina, and Thomas Ertl. Visualization of Molecular Structures using State-of-the-Art Techniques in WebGL. International Conference on 3D Web Technology (Web3D'14), (19)2014. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:ertl visus:mwalonfn visus sfb716-d3 vis-ertl visus:karchgz vis-gis from:mueller vis(us) 2014] URL

Finian Mwalongo, Michael Krone, Grzegorz Karol Karch, Michael Becher, Guido Reina, and Thomas Ertl. Visualization of Molecular Structures using State-of-the-Art Techniques in WebGL. International Conference on 3D Web Technology (Web3D'14), (19)2014. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:ertl visus:mwalonfn visus sfb716-d3 vis-ertl visus:karchgz vis-gis vis(us) 2014] URL

Martin Falk. Visualization and mesoscopic simulation in systems biology. 2013. [PUMA: vis-ertl biovis simtech vis-gis vis(us) 2013 visus:falkmn visus]

Michael Krone, Daniel Kauker, Guido Reina, and Thomas Ertl. Visual Analysis of Dynamic Protein Cavities and Binding Sites. IEEE PacificVis - Visualization Notes, (1)2014. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:kaukerdl visus:ertl visus sfb716-d3 vis-ertl vis-gis vis(us) 2014] URL

Michael Krone, Daniel Kauker, Guido Reina, and Thomas Ertl. Visual Analysis of Dynamic Protein Cavities and Binding Sites. IEEE PacificVis - Visualization Notes, (1)2014. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:kaukerdl visus:ertl visus sfb716-d3 vis-ertl vis-gis from:mueller vis(us) 2014] URL

Thomas Ertl, Michael Krone, Stefan Kesselheim, Katrin Scharnowski, Guido Reina, and Christian Holm. Visual Analysis for Space-Time Aggregation of Biomolecular Simulations. In Royal Society for Chemistry (Eds.), Faraday Discussions, (169)2014. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:holmcn visus:kesselsn visus:ertl visus sfb716-c5 sfb716-d3 vis-ertl volume-visualisation vis-gis vis(us) 2014 visus:scharnkn] URL

Thomas Ertl, Michael Krone, Stefan Kesselheim, Katrin Scharnowski, Guido Reina, and Christian Holm. Visual Analysis for Space-Time Aggregation of Biomolecular Simulations. In Royal Society for Chemistry (Eds.), Faraday Discussions, (169)2014. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:holmcn visus:kesselsn visus:ertl visus sfb716-c5 sfb716-d3 vis-ertl volume-visualisation vis-gis from:mueller vis(us) 2014 visus:scharnkn] URL

Finian Mwalongo, Michael Krone, Michael Becher, Guido Reina, and Thomas Ertl. Remote Visualization of Dynamic Molecular Data using WebGL. In ACM (Eds.), International Conference on 3D Web Technology (Web3D), (20)2015. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:ertl visus:mwalonfn visus sfb716-d3 vis-ertl vis-gis 2015 from:mueller vis(us)] URL

Finian Mwalongo, Michael Krone, Michael Becher, Guido Reina, and Thomas Ertl. Remote Visualization of Dynamic Molecular Data using WebGL. In ACM (Eds.), International Conference on 3D Web Technology (Web3D), (20)2015. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:ertl visus:mwalonfn visus sfb716-d3 vis-ertl vis-gis 2015 vis(us)] URL

Michael Krone, Christoph Müller, Thomas Ertl, Daniel Kauker, Augusto Cravo Silva, Diana Salsa, Manuel Gräber, and Manuela Kallert. Remote Rendering and User Interaction on Mobile Devices for Scientific Visualization. International Symposium on Visual Information Communication and Interaction (VINCI), (8)ACM, 2015. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:kaukerdl visus:ertl visus:mueller visus vis-ertl vis-gis 2015 from:mueller vis(us)] URL

Michael Krone, Christoph Müller, Thomas Ertl, Daniel Kauker, Augusto Cravo Silva, Diana Salsa, Manuel Gräber, and Manuela Kallert. Remote Rendering and User Interaction on Mobile Devices for Scientific Visualization. International Symposium on Visual Information Communication and Interaction (VINCI), (8)ACM, 2015. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:kaukerdl visus:ertl visus:mueller visus vis-ertl vis-gis 2015 vis(us)] URL

Martin Falk, Michael Klann, Michael Ott, Heinz Koeppl, and Thomas Ertl. Parallelized Agent-based Simulation on CPU and Graphics Hardware for Spatial and Stochastic Models in Biology. In François Fages (Eds.), International Conference on Computational Methods in Systems Biology (CMSB 2011), ACM, 2011. [PUMA: vis-ertl biovis vis-gis vis(us) 2011 visus:ertl visus:falkmn visus] URL

Michael Krone, Sebastian Grottel, and Thomas Ertl. Parallel Contour-Buildup Algorithm for the Molecular Surface. Proceedings of IEEE Symposium on Biological Data Visualization (biovis'11), 2011. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:grottel 2011 visus:ertl visus sfb716-d3 vis-ertl vis-gis vis(us)] URL

Michael Krone, Sebastian Grottel, and Thomas Ertl. Parallel Contour-Buildup Algorithm for the Molecular Surface. Proceedings of IEEE Symposium on Biological Data Visualization (biovis'11), 2011. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:grottel 2011 visus:ertl visus sfb716-d3 vis-ertl vis-gis from:mueller vis(us)] URL

Michael Krone, Carsten Dachsbacher, and Thomas Ertl. Parallel Computation and Interactive Visualization of Time-varying Solvent Excluded Surfaces. International Conference On Bioinformatics and Computational Biology, (2010)ACM, 2010. [PUMA: sfb716-d4-ertl vis-vc biovis visus:kroneml visus:ertl 2010 visus:dachsbcn visus vis-ertl vis-gis vis(us)] URL

Michael Krone, Carsten Dachsbacher, and Thomas Ertl. Parallel Computation and Interactive Visualization of Time-varying Solvent Excluded Surfaces. International Conference On Bioinformatics and Computational Biology, (2010)ACM, 2010. [PUMA: sfb716-d4-ertl vis-vc biovis visus:kroneml visus:ertl 2010 visus:dachsbcn visus vis-ertl vis-gis from:mueller vis(us)] URL

Christoph Müller, Michael Krone, Katrin Scharnowski, Guido Reina, and Thomas Ertl. On the Utility of Large High-Resolution Displays for Comparative Scientific Visualisation. International Symposium on Visual Information Communication and Interaction (VINCI), (8)ACM, 2015. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml vvand visus:ertl visus:mueller visus gigapixel sfb716-d3 vis-ertl vis-gis 2015 vis(us) visus:scharnkn] URL

Christoph Müller, Michael Krone, Katrin Scharnowski, Guido Reina, and Thomas Ertl. On the Utility of Large High-Resolution Displays for Comparative Scientific Visualisation. International Symposium on Visual Information Communication and Interaction (VINCI), (8)ACM, 2015. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml vvand visus:ertl visus:mueller visus gigapixel sfb716-d3 vis-ertl vis-gis 2015 from:mueller vis(us) visus:scharnkn] URL

Katrin Scharnowski, Michael Krone, Guido Reina, and Thomas Ertl. On the Reproducibility of our Biomolecular Visualization. In W. Aigner, P. Rosenthal, and C. Scheidegger (Eds.), EuroRV3: EuroVis Workshop on Reproducibility, Verification, and Validation in Visualization, (3)The Eurographics Association, 2015. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:ertl visus sfb716-d3 vis-ertl vis-gis 2015 from:mueller vis(us) visus:scharnkn] URL

Katrin Scharnowski, Michael Krone, Guido Reina, and Thomas Ertl. On the Reproducibility of our Biomolecular Visualization. In W. Aigner, P. Rosenthal, and C. Scheidegger (Eds.), EuroRV3: EuroVis Workshop on Reproducibility, Verification, and Validation in Visualization, (3)The Eurographics Association, 2015. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:ertl visus sfb716-d3 vis-ertl vis-gis 2015 vis(us) visus:scharnkn] URL

Kai Lawonn, Michael Krone, Thomas Ertl, and Bernhard Preim. On the Reproducibility of Line Integral Convolution for Real-Time Illustration of Molecular Surface Shape and Salient Regions. EuroRV3: EuroVis Workshop on Reproducibility, Verification, and Validation in Visualization, (3)2015. [PUMA: sfb716-d4-ertl vis-ertl biovis visus:kroneml vis-gis 2015 from:mueller vis(us) visus:ertl visus] URL

Kai Lawonn, Michael Krone, Thomas Ertl, and Bernhard Preim. On the Reproducibility of Line Integral Convolution for Real-Time Illustration of Molecular Surface Shape and Salient Regions. EuroRV3: EuroVis Workshop on Reproducibility, Verification, and Validation in Visualization, (3)2015. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:ertl visus vis-ertl vis-gis 2015 vis(us)] URL

Michael Krone, Florian Frieß, Katrin Scharnowski, Guido Reina, Silvia Fademrecht, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Molecular Surface Maps. IEEE Transactions on Visualization and Computer Graphics (Proceedings of the Scientific Visualization 2016), (23)12017. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml sfbtrr161 sfb716-d4-pleiss visus:ertl visus sfb716-d3 sfb716-d4 vis-ertl visus:friessfn sfb716-c1 2017 vis-gis from:mueller vis(us) visus:pleissjn visus:scharnkn] URL

Michael Krone, Florian Frieß, Katrin Scharnowski, Guido Reina, Silvia Fademrecht, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Molecular Surface Maps. IEEE Transactions on Visualization and Computer Graphics (Proceedings of the Scientific Visualization 2016), (23)12017. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml sfbtrr161 sfb716-d4-pleiss visus:ertl visus sfb716-d3 sfb716-d4 vis-ertl visus:friessfn sfb716-c1 2017 vis-gis vis(us) visus:pleissjn visus:scharnkn] URL

Michael Krone, Florian Frieß, Katrin Scharnowski, Guido Reina, Silvia Fademrecht, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Molecular Surface Maps. IEEE Transactions on Visualization and Computer Graphics, (23)12017. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml sfbtrr161 sfb716-d4-pleiss visus:ertl visus sfb716-d3 vis-ertl visus:friessfn sfb716-c1 2017 vis-gis from:mueller vis(us) visus:pleissjn visus:scharnkn] URL

Martin Falk, Markus Daub, Guido Schneider, and Thomas Ertl. Modeling and Visualization of Receptor Clustering on the Cellular Membrane. IEEE Symposium on Biological Data Visualization (BioVis 2011), 2011. [PUMA: vis-ertl biovis vis-gis vis(us) 2011 visus:ertl visus:falkmn visus] URL

Sebastian Grottel, Michael Krone, Christoph Müller, Guido Reina, and Thomas Ertl. MegaMol – A Prototyping Framework for Particle-based Visualization. IEEE Transactions on Visualization and Computer Graphics, (21)2IEEE, 2015. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:grottel vvand sfb716 visus:ertl visus:mueller visus gigapixel sfb716-d3 vis-ertl vis-gis 2015 from:mueller vis(us)] URL

Sebastian Grottel, Michael Krone, Christoph Müller, Guido Reina, and Thomas Ertl. MegaMol – A Prototyping Framework for Particle-based Visualization. IEEE Transactions on Visualization and Computer Graphics, (21)2IEEE, 2015. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:grottel vvand sfb716 visus:ertl visus:mueller visus gigapixel sfb716-d3 vis-ertl vis-gis 2015 vis(us)] URL

Kai Lawonn, Michael Krone, Thomas Ertl, and Bernhard Preim. Line Integral Convolution for Real-Time Illustration of Molecular Surface Shape and Salient Regions. Computer Graphics Forum, (33)32014. [PUMA: sfb716-d4-ertl vis-ertl biovis visus:kroneml vis-gis from:mueller vis(us) 2014 visus:ertl visus] URL

Kai Lawonn, Michael Krone, Thomas Ertl, and Bernhard Preim. Line Integral Convolution for Real-Time Illustration of Molecular Surface Shape and Salient Regions. Computer Graphics Forum, (33)32014. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:ertl visus vis-ertl vis-gis vis(us) 2014] URL

Michael Krone, Katrin Bidmon, and Thomas Ertl. Interactive Visualization of Molecular Surface Dynamics. IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization / Information Visualization 2009), (15)62009. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:ertl visus 2009 vis-ertl vis-gis vis(us) visus:bidmon] URL

Michael Krone, Katrin Bidmon, and Thomas Ertl. Interactive Visualization of Molecular Surface Dynamics. IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization / Information Visualization 2009), (15)62009. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:ertl visus 2009 vis-ertl vis-gis from:mueller vis(us) visus:bidmon] URL

Michael Krone, Martin Falk, Sascha Rehm, Jürgen Pleiss, and Thomas Ertl. Interactive Exploration of Protein Cavities. Computer Graphics Forum, (30)32011. [PUMA: sfb716-d4-ertl biovis visus:kroneml 2011 visus:falkmn visus:ertl visus:rehmsa visus vis-ertl sfb716-c1 vis-gis from:mueller vis(us) visus:pleissjn] URL

Michael Krone, Martin Falk, Sascha Rehm, Jürgen Pleiss, and Thomas Ertl. Interactive Exploration of Protein Cavities. Computer Graphics Forum, (30)32011. [PUMA: sfb716-d4-ertl biovis visus:kroneml 2011 visus:ertl visus:falkmn visus:rehmsa visus vis-ertl sfb716-c1 vis-gis vis(us) visus:pleissjn] URL

Michael Krone, Guido Reina, Sebastian Zahn, Tina Tremel, Carsten Bahnmüller, and Thomas Ertl. Implicit Sphere Shadow Maps. IEEE PacificVis - Visualization Notes, (4)2017. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:ertl visus sfb716-d3 sfb716-d4 vis-ertl 2017 vis-gis vis(us)]

Michael Krone, Guido Reina, Sebastian Zahn, Tina Tremel, Carsten Bahnmüller, and Thomas Ertl. Implicit Sphere Shadow Maps. IEEE PacificVis - Visualization Notes, (4)2017. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:ertl visus sfb716-d3 sfb716-d4 vis-ertl 2017 vis-gis from:mueller vis(us)]

Michael Krone, Katrin Bidmon, and Thomas Ertl. GPU-based Visualisation of Protein Secondary Structure. Proceedings of TP.CG'08, 2008. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:ertl visus vis-ertl 2008 vis-gis vis(us) visus:bidmon] URL

Michael Krone, Katrin Bidmon, and Thomas Ertl. GPU-based Visualisation of Protein Secondary Structure. Proceedings of TP.CG'08, 2008. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:ertl visus vis-ertl 2008 vis-gis from:mueller vis(us) visus:bidmon] URL

Finian Mwalongo, Michael Krone, Michael Becher, Guido Reina, and Thomas Ertl. GPU-based Remote Visualization of Dynamic Molecular Data on the Web. Graphical Models, (88)Elsevier, 2016. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:ertl visus:mwalonfn visus sfb716-d3 vis-ertl vis-gis 2016 from:mueller vis(us)] URL

Finian Mwalongo, Michael Krone, Michael Becher, Guido Reina, and Thomas Ertl. GPU-based Remote Visualization of Dynamic Molecular Data on the Web. Graphical Models, (88)Elsevier, 2016. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:ertl visus:mwalonfn visus sfb716-d3 vis-ertl vis-gis 2016 vis(us)] URL

Michael Krone, John E. Stone, Thomas Ertl, and Klaus Schulten. Fast Visualization of Gaussian Density Surfaces for Molecular Dynamics and Particle System Trajectories. EuroVis 2012 Short Papers, (1)2012. [PUMA: sfb716-d4-ertl biovis visus:kroneml 2012 visus:ertl visus vis-ertl volume-visualisation vis-gis vis(us)] URL

Michael Krone, John E. Stone, Thomas Ertl, and Klaus Schulten. Fast Visualization of Gaussian Density Surfaces for Molecular Dynamics and Particle System Trajectories. EuroVis 2012 Short Papers, (1)2012. [PUMA: sfb716-d4-ertl biovis visus:kroneml 2012 visus:ertl visus vis-ertl volume-visualisation vis-gis from:mueller vis(us)] URL

Benjamin Rau, Florian Frieß, Michael Krone, Christoph Müller, and Thomas Ertl. Enhancing Visualization of Molecular Simulations using Sonification. International Workshop on Virtual and Augmented Reality for Molecular Science (VARMS@IEEEVR), (1)IEEE, 2015. [PUMA: sfb716-d4-ertl biovis visus:kroneml vvand visus:ertl visus:mueller visus vis-ertl vis-gis 2015 from:mueller vis(us)] URL

Benjamin Rau, Florian Frieß, Michael Krone, Christoph Müller, and Thomas Ertl. Enhancing Visualization of Molecular Simulations using Sonification. International Workshop on Virtual and Augmented Reality for Molecular Science (VARMS@IEEEVR), (1)IEEE, 2015. [PUMA: sfb716-d4-ertl biovis visus:kroneml vvand visus:ertl visus:mueller visus vis-ertl vis-gis 2015 vis(us)] URL

Katrin Scharnowski, Michael Krone, Guido Reina, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Comparative Visualization of Molecular Surfaces Using Deformable Models. Computer Graphics Forum, (33)32014. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:ertl visus sfb716-d3 vis-ertl sfb716-c1 vis-gis from:mueller vis(us) 2014 visus:pleissjn visus:scharnkn visus:kulschts] URL

Katrin Scharnowski, Michael Krone, Guido Reina, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Comparative Visualization of Molecular Surfaces Using Deformable Models. Computer Graphics Forum, (33)32014. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:ertl visus sfb716-d3 vis-ertl sfb716-c1 vis-gis vis(us) 2014 visus:pleissjn visus:scharnkn visus:kulschts] URL

Martin Falk, Michael Krone, and Thomas Ertl. Atomistic Visualization of Mesoscopic Whole-Cell Simulations using Ray-Casted Instancing. Computer Graphics Forum, (32)82013. [PUMA: sfb716-d4-ertl biovis visus:kroneml 2013 visus:ertl visus:falkmn visus vis-ertl vis-gis vis(us)] URL

Martin Falk, Michael Krone, and Thomas Ertl. Atomistic Visualization of Mesoscopic Whole-Cell Simulations using Ray-Casted Instancing. Computer Graphics Forum, (32)82013. [PUMA: sfb716-d4-ertl biovis visus:kroneml 2013 visus:falkmn visus:ertl visus vis-ertl vis-gis from:mueller vis(us)] URL

Martin Falk, Michael Krone, and Thomas Ertl. Atomistic Visualization of Mesoscopic Whole-Cell Simulations. EG Workshop on Visual Computing for Biology and Medicine (VCBM), 2012. [PUMA: sfb716-d4-ertl biovis visus:kroneml 2012 visus:falkmn visus:ertl visus vis-ertl vis-gis from:mueller vis(us)] URL

Martin Falk, Michael Krone, and Thomas Ertl. Atomistic Visualization of Mesoscopic Whole-Cell Simulations. EG Workshop on Visual Computing for Biology and Medicine (VCBM), 2012. [PUMA: sfb716-d4-ertl biovis visus:kroneml 2012 visus:ertl visus:falkmn visus vis-ertl vis-gis vis(us)] URL

Christoph Müller, Michael Krone, Katrin Scharnowski, Guido Reina, and Thomas Ertl. An Evaluation of the Utility of Large High-Resolution Displays for Comparative Scientific Visualisation. International Journal of Software and Informatics, (9)32016. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml vvand visus:ertl visus:mueller visus gigapixel sfb716-d3 sfb716-d4 vis-ertl vis-gis 2016 from:mueller vis(us) visus:scharnkn]

Christoph Müller, Michael Krone, Katrin Scharnowski, Guido Reina, and Thomas Ertl. An Evaluation of the Utility of Large High-Resolution Displays for Comparative Scientific Visualisation. International Journal of Software and Informatics, (9)32016. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml vvand visus:ertl visus:mueller visus gigapixel sfb716-d3 sfb716-d4 vis-ertl vis-gis 2016 vis(us) visus:scharnkn]