Publications

Amelie Wührl, Lara Grimminger, and Roman Klinger. An Entity-based Claim Extraction Pipeline for Real-world Fact-checking. Proceedings of the Sixth Fact Extraction and VERification Workshop (FEVER), Dubrovnik, Croatia, 2023. [PUMA: imported nlp entitylinking myown argument language claims from:dr.romanklinger bionlp]

Amelie Wührl, Lara Grimminger, and Roman Klinger. An Entity-based Claim Extraction Pipeline for Real-world Fact-checking. Proceedings of the Sixth Fact Extraction and VERification Workshop (FEVER), Dubrovnik, Croatia, 2023. [PUMA: argument bionlp claims entitylinking imported language myown nlp]

Amelie Wührl, and Roman Klinger. Entity-based Claim Representation Improves Fact-Checking of Medical Content in Tweets. Proceedings of the 9th Workshop on Argument Mining, 187--198, International Conference on Computational Linguistics, Online and in Gyeongju, Republic of Korea, October 2022. [PUMA: bionlp imported myown nlp socialmedia] URL

Isabelle Mohr, Amelie Wührl, and Roman Klinger. CoVERT: A Corpus of Fact-checked Biomedical COVID-19 Tweets. Proceedings of The 13th Language Resources and Evaluation Conference, European Language Resources Association, Marseille, France, June 2022. [PUMA: argument bionlp claims factchecking imported myown nlp socialmedia]

Amelie Wührl, and Roman Klinger. Claim Detection in Biomedical Twitter Posts. BioNLP: Proceedings of the 2021 Workshop on Biomedical Natural Language Processing, 2021. [PUMA: argumentmining bionlp claimdetection myown nlp socialmedia] URL

Camilo Thorne, and Roman Klinger. On the Semantic Similarity of Disease Mentions in MEDLINE and Twitter. Natural Language Processing and Information Systems: 23rd International Conference on Applications of Natural Language to Information Systems, NLDB 2018, Paris, France, June 13-15, 2018, Proceedings, Springer International Publishing, Cham, 2018. [PUMA: bionlp diseasenames myown ner socialmedia twitter] URL

H. ter Horst, M. Hartung, R. Klinger, M. Zwick, and P. Cimiano. Predicting Disease-Gene Associations using Cross-Document Graph-based Features. ArXiv e-prints, September 2017. [PUMA: bionlp disease myown ner] URL

Nicole Brazda, Hendrik ter Horst, Matthias Hartung, Cord Wiljes, Veronica Estrada, Roman Klinger, Wolfgang Kuchinke, Hans Werner Müller, and Philipp Cimiano. SCIO: An Ontology to Support the Formalization of Pre-Clinical Spinal Cord Injury Experiments. Workshop on Ontologies and Data in Life Sciences (ODLS 2017), Joint Workshops on Ontologies (JOWO), Bolzano, Italy, September 2017. [PUMA: bionlp cord injury myown nlp ontology sci spinal] URL

Shweta Bagewadi, Tamara Bobić, Martin Hofmann-Apitius, Juliane Fluck, and Roman Klinger. Detecting miRNA Mentions and Relations in Biomedical Literature version 3; referees: 2 approved, 1 approved with reservations. F1000Research, (3)2052014. [PUMA: bionlp literature mirna myown ner relation text] URL

Roman Klinger, Sebastian Riedel, and Andrew McCallum. Inter-Event Dependencies support Event Extraction from Biomedical Literature. Mining Complex Entities from Network and Biomedical Data (MIND), European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD), 2011. [PUMA: bionlp event extraction graph information myown search] URL

Roman Klinger. Conditional Random Fields for Named Entity Recognition - Feature Selection and Optimization in Biology and Chemistry. Fraunhofer Series in Information and Communication Technology, Shaker, Aachen, Germany, 2011. [PUMA: bionlp crf imported myown ner] URL

Matthias Hartung, Roman Klinger, Matthias Zwick, and Philipp Cimiano. Towards Gene Recognition from Rare and Ambiguous Abbreviations using a Filtering Approach. Proceedings of BioNLP 2014, 118-127, Association for Computational Linguistics, Baltimore, Maryland, June 2014. [PUMA: abbreviations bionlp myown] URL

Tamara Bobic, Roman Klinger, Philippe Thomas, and Martin Hofmann-Apitius. Improving Distantly Supervised Extraction of Drug-Drug and Protein-Protein Interactions. Proceedings of the Joint Workshop on Unsupervised and Semi-Supervised Learning in NLP, 35-43, Association for Computational Linguistics, Avignon, France, April 2012. [PUMA: bionlp ddi drug interaction myown nlp ppi protein] URL

Larry Smith, Lorraine K. Tanabe, Rie Johnson nee Ando, Cheng-Ju Juo, I-Fang Chung, Chun-Nan Hsu, Yu-Shi Lin, Roman Klinger, Christoph M. Friedrich, Kuzman Ganchev, Manabu Torii, Hongfang Liu, Barry Haddow, Craig A. Struble, Richard J. Povinelli, Andreas Vlachos, William A. Baumgartner Jr., Lawrence Hunter, Bob Carpenter, Richard Tzong-Han Tsai, Hong jie Dai, Feng Liu, Yifei Chen, Chengjie Sun, Sophia Katrenko, Pieter Adriaans, Christian Blaschke, Rafel Torres Perez, Mariana Neves, Preslav Nakov, Anna Divoli, Manuel Mana, Jacinto Mata-Vazquez, and W. John Wilbur. Overview of BioCreative II Gene Mention Recognition. Genome Biology, (9)Suppl 2:S2.2-S2.18, September 2008. [PUMA: bionlp competition gene myown ner protein shared task] URL

Bernd Müller, Roman Klinger, Harsha Gurulingappa, Heinz-Theodor Mevissen, Martin Hofmann-Apitius, Juliane Fluck, and Christoph M. Friedrich. Abstracts versus Full Texts and Patents: A Quantitative Analysis of Biomedical Entities. Proceedings of the 1st IRF Conference, Springer, 2010. [PUMA: bionlp entities myown] URL

Roman Klinger, Christoph M. Friedrich, Juliane Fluck, and Martin Hofmann-Apitius. Named Entity Recognition with Combinations of Conditional Random Fields. Proceedings of the Second BioCreative Challenge Evaluation Workshop, 89-91, Madrid, Spain, April 2007. [PUMA: bionlp crf myown ner]

Philippe E. Thomas, Roman Klinger, Laura I. Furlong, Martin Hofmann-Apitius, and Christoph M. Friedrich. Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers.. BMC Bioinformatics, (12(Suppl 4))S42011. [PUMA: bionlp mutation myown snp] URL