Publications

Taiting Lu, Christian Krauter, Runze Liu, Mara Schulte, Alexander Achberger, Tanja Blascheck, Michael Sedlmair, and Mahanth Gowda. VisRing: A Display-Extended Smartring for Nano Visualizations. UIST, 1-18, ACM, New York, NY, USA, October 2025. [PUMA: simtech2-pn7 myown simtech simtech2 exzellenzcluster dfg visus exc2075 visus-sedlmair vis(us) pn7 visus-schmalstieg]

Emelie Weinhold. Simulation of DNA-Origami coupled to Lipid Vesicles Implemented in ESpreSso. 2025. [PUMA: simtech pn3-11 updated exc2075]

Sofia Kolin, Moritz G. Marquardt, Gotthold Fläschner, Martin Kessler, Stefan Naumann, and Kristyna Pluhackova. Supplementary Information to "Molecular determinants of solvent nanoseparation by nanoporous carbon materials". DaRUS, 2025. [PUMA: myown simtech pn3-11 pn3 a08 updated exc2075 crc1333] URL

Sofia Kolin, Moritz G. Marquardt, Gotthold Fläschner, Martin Kessler, Stefan Naumann, and Kristyna Pluhackova. Molecular Determinants of Solvent Nanoseparation by Nanoporous Carbon Materials. ACS Materials Letters, 3714–3723, American Chemical Society (ACS), October 2025. [PUMA: myown simtech pn3-11 pn3 A08 updated exc2075 crc1333] URL

Kristyna Pluhackova. Supplementary Data to: "Cysteine-mediated structural stabilization of the tetrameric GlpF". DaRUS, 2025. [PUMA: myown simtech pn3-11 updated exc2075] URL

Christine Siligan, Sascha Gratzl, Kristyna Pluhackova, Nikolaus Goessweiner-Mohr, Peter Pohl, and Andreas Horner. Cysteine-mediated structural stabilization of the tetrameric GlpF. European Biophysics Journal, Nov 3, 2025. [PUMA: myown simtech pn3-11 updated exc2075] URL

Cristiano Guttà, Christoph Morhard, and Markus Rehm. Applying a GAN-based classifier to improve transcriptome-based prognostication in breast cancer. PLOS Computational Biology, (19)4:1-20, Public Library of Science, April 2023. [PUMA: myown pn2 simtech izi 2023 EXC2075 morrison] URL

Daniela Stöhr, Jens O. Schmid, Tobias B. Beigl, Alexandra Mack, Daniela S. Maichl, Kai Cao, Beate Budai, Gavin Fullstone, Roland E. Kontermann, Thomas E. Mürdter, Stephen W. G. Tait, Cathrin Hagenlocher, Nadine Pollak, Peter Scheurich, and Markus Rehm. Stress-induced TRAILR2 expression overcomes TRAIL resistance in cancer cell spheroids. Cell Death & Differentiation, 2020. [PUMA: pn2 simtech izi EXC2075 2020 morrison] URL

Cristiano Guttà, Arman Rahman, Claudia Aura, Peter Dynoodt, Emilie M. Charles, Elodie Hirschenhahn, Jesuchristopher Joseph, Jasper Wouters, Ciaran de Chaumont, Mairin Rafferty, Madhuri Warren, Joost J. van den Oord, William M. Gallagher, and Markus Rehm. Low expression of pro-apoptotic proteins Bax, Bak and Smac indicates prolonged progression-free survival in chemotherapy-treated metastatic melanoma. Cell Death & Disease, (11)2:124, Nature Publishing Group, February 2020. [PUMA: myown pn2 simtech izi EXC2075 2020 morrison] URL

Cathrin Hagenlocher, Robin Siebert, Bruno Taschke, Senait Wieske, Angelika Hausser, and Markus Rehm. ER stress-induced cell death proceeds independently of the TRAIL-R2 signaling axis in pancreatic β cells. Cell Death Discovery, (8)1:34, Jan 24, 2022. [PUMA: pn2 simtech izi 2022 EXC2075 hausser morrison] URL

Vesna Vetma, Cristiano Guttà, Nathalie Peters, Christian Praetorius, Meike Hutt, Oliver Seifert, Friedegund Meier, Roland Kontermann, Dagmar Kulms, and Markus Rehm. Convergence of pathway analysis and pattern recognition predicts sensitization to latest generation TRAIL therapeutics by IAP antagonism. Cell Death & Differentiation 2020, 1--16, Nature Publishing Group, February 2020. [PUMA: myown pn2 simtech izi EXC2075 2020 morrison] URL

Dirke Imig, Nadine Pollak, Frank Allgöwer, and Markus Rehm. Sample-based modeling reveals bidirectional interplay between cell cycle progression and extrinsic apoptosis. PLOS Computational Biology, (16)6:1-17, Public Library of Science, June 2020. [PUMA: pn2 simtech izi EXC2075 2020 morrison] URL

Christian T. Hellwig, M. Eugenia Delgado, Josip Skoko, Lydia Dyck, Carol Hanna, Alexa Wentges, Claudia Langlais, Cathrin Hagenlocher, Alexandra Mack, David Dinsdale, Kelvin Cain, Marion MacFarlane, and Markus Rehm. Proteasome inhibition triggers the formation of TRAIL receptor 2 platforms for caspase-8 activation that accumulate in the cytosol. Cell Death & Differentiation 2021, 1--9, Nature Publishing Group, August 2021. [PUMA: pn2 simtech izi 2021 EXC2075 morrison] URL

Cristiano Guttà, Christoph Morhard, and Markus Rehm. Applying GAN-based data augmentation to improve transcriptome-based prognostication in breast cancer. medRxiv, Cold Spring Harbor Laboratory Press, October 2022. [PUMA: myown pn2 simtech izi 2022 EXC2075 morrison] URL

Wolfgang Ehlers, Markus Morrison (Rehm), Patrick Schröder, Daniela Stöhr, and Arndt Wagner. Multiphasic modelling and computation of metastatic lung-cancer cell proliferation and atrophy in brain tissue based on experimental data. Biomechanics and Modeling in Mechanobiology, 2021. [PUMA: pn2 simtech izi 2021 EXC2075 morrison] URL

Daniela Stöhr, and Markus Rehm. Linking hyperosmotic stress and apoptotic sensitivity. The FEBS Journal, febs.15520, Blackwell Publishing Ltd, August 2020. [PUMA: pn2 simtech izi EXC2075 2020 morrison] URL

Gavin Fullstone, Cristiano Guttà, Amatus Beyer, and Markus Rehm. The FLAME-accelerated signalling tool (FaST) for facile parallelisation of flexible agent-based models of cell signalling. npj Systems Biology and Applications, (6)1:10--, 2020. [PUMA: pn2 simtech izi EXC2075 2020 morrison] URL

Tobias B Beigl, Alexander Paul, Thomas P Fellmeth, Dang Nguyen, Lynn Barber, Sandra Weller, Benjamin Schäfer, Bernhard F Gillissen, Walter E Aulitzky, Hans-Georg Kopp, Markus Rehm, David W Andrews, Kristyna Pluhackova, and Frank Essmann. BCL-2 and BOK regulate apoptosis by interaction of their C-terminal transmembrane domains. EMBO reports, (25)9:3896-3924--3924, John Wiley & Sons, Ltd, September 2024. [PUMA: simtech izi 2024 morrison] URL

Karsten Kuritz, Daniela Stöhr, Daniela Simone Maichl, Nadine Pollak, Markus Rehm, and Frank Allgöwer. Reconstructing temporal and spatial dynamics from single-cell pseudotime using prior knowledge of real scale cell densities. Scientific Reports, (10)1:3619, Nature Publishing Group, December 2020. [PUMA: pn2 simtech izi EXC2075 2020 morrison] URL

Cristiano Guttà, Christoph Morhard, and Markus Rehm. T-GAN-D: a GAN-based classifier for breast cancer prognostication. Zenodo, October 2022. [PUMA: myown pn2 simtech izi 2022 EXC2075 morrison] URL