Publications

Adam Rule, Amanda Birmingham, Cristal Zuniga, Ilkay Altintas, Shih-Cheng Huang, Rob Knight, Niema Moshiri, Mai H. Nguyen, Sara Brin Rosenthal, Fernando Pérez, and Peter W. Rose. Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks. PLOS Computational Biology, (15)7:1-8, Public Library of Science, July 2019. [PUMA: bestPractice jupyter software workflows] URL

Michael Bar-Sinai, and Matthew Dunlap. The Open Monolith - Keeping Your Codebase (and Your Headaches) Small. In JavaOne (Eds.), 2017. [PUMA: forschungsdaten development software workflows dataverse repository]