Publications

Soo-Yon Kim, Martin Görz, and Sandra Geisler. KONDA: An LLM-based Tool for Semantic Annotation and Knowledge Graph Creation Using Ontologies for Research Data. Zenodo, August 2025. [PUMA: forschungsdaten metadata AI tools LLM] URL

Ove Johan Ragnar Gustafsson, Sean R. Wilkinson, Finn Bacall, Stian Soiland-Reyes, Simone Leo, Luca Pireddu, Stuart Owen, Nick Juty, José M. Fernández, Tom Brown, Hervé Ménager, Björn Grüning, Salvador Capella-Gutierrez, Frederik Coppens, and Carole Goble. WorkflowHub: a registry for computational workflows. Scientific Data, (12)1:837--, 2025. [PUMA: registry forschungsdaten metadata researchObjects tools] URL

Florian Fritze, Björn Selent, Karoline Weinspach, Sarbani Roy, and Dorothea Iglezakis. Efficient Data Curation by Automating Workflows. In Philipp Kling (Eds.), E-Science-Tage 2025 Research Data Management: Challenges in a Changing World, heiBOOKS 2025. [PUMA: myown forschungsdaten metadata curation tools]

Roman Baum. Einführung in Terminologien und Terminologiedienste. Zenodo, February 2025. [PUMA: terminologies forschungsdaten metadata pid tools] URL

Rungsiman Nararatwong, Natthawut Kertkeidkachorn, and Ryutaro Ichise. Knowledge Graph Visualization: Challenges, Framework, and Implementation. 2020 IEEE Third International Conference on Artificial Intelligence and Knowledge Engineering (AIKE), 174-178, December 2020. [PUMA: visualization tools knowledgegraph]

Björn Schembera. Like a rainbow in the dark: metadata annotation for HPC applications in the age of dark data. The Journal of Supercomputing, (77)8:8946--8966, 2021. [PUMA: metadata engmeta tools extraction] URL

Michael Selzer. Kadi4Mat - Karlsruhe Data Infrastructure for Materials Science. Zenodo, 2023. [PUMA: forschungsdaten software eln tools] URL

Stefan Bieliauskas, and Andreas Schreiber. DLR-SC/prov-comics: QS PROV Comics Prototype - Big fixes. Zenodo, April 2017. [PUMA: forschungsdaten provenance metadata software comics tools javascript] URL

Benedikt Heinrichs, and Marius Politze. Moving towards a General Metadata Extraction Solution for Research Data with State-of-the-Art Methods.. KDIR, 227--234, 2020. [PUMA: forschungsdaten metadata harvesting similarity tools]

Robert L Grossman. Data Lakes, Clouds, and Commons: A Review of Platforms for Analyzing and Sharing Genomic Data. Trends in genetics : TIG, (35)3:223--234, England, March 2019. [PUMA: forschungsdaten definition tools] URL

Paul Richmond, Dawn Walker, Simon Coakley, and Daniela Romano. High performance cellular level agent-based simulation with FLAME for the GPU. Briefings in bioinformatics, (11)3:334--347, Oxford Univ Press, 2010. [PUMA: simulations tools]

Matthias Ruf, and Holger Steeb. An open, modular, and flexible micro X-ray computed tomography system for research. Review of Scientific Instruments, (91)11:113102, 2020. [PUMA: sfb1313 x-ray relatedpublication tools] URL

Timo Koch, Dennis Gläser, Anett Seeland, Sarbani Roy, Katharina Schulze, Kilian Weishaupt, David Boehringer, Sibylle Hermann, and Bernd Flemisch. A sustainable infrastructure concept for improved accessibility, reusability, and archival of research software. 2023. [PUMA: forschungsdaten software tools repository]

Markus Hirsch, Dorothea Iglezakis, Frank Leymann, and Michael Zimmermann. The ReSUS Project - Infrastructure for Sharing Research Software. E-Science-Tage 2021: Share Your Research Data, 267-276, heiBOOKS, 2022. [PUMA: myown forschungsdaten metadata software tools repository] URL

Johannes Lipp, Lars Gleim, Michael Cochez, Iraklis Dimitriadis, Hussain Ali, Daniel Hoppe Alvarez, Christoph Lange, and Stefan Decker. Towards Easy Vocabulary Drafts with Neologism 2.0. ESWC2021 Poster and Demo Track, 2021. [PUMA: metadata ontologie tools] URL

Kerstin Helbig, Ivonne Anders, Petra Buchholz, Gianpiero Favella, Daniela Hausen, Sonja Hendriks, Jochen Klar, Evamaria Krause, Thilo Paul-Stüve, Karsten Peters, Torsten Rathmann, Stephanie Rehwald, Jessica Rex, Volker Soßna, Johannes Sperling, Annette Strauch, and Pia Voigt. Erfahrungen und Empfehlungen aus der Beratung bei Datenmanagementplänen. Bausteine Forschungsdatenmanagement, 2:29–40, Okt. 2020. [PUMA: checklisten forschungsdaten dmp tools] URL

Michael C. Jaeger, Oliver Fendt, Robert Gobeille, Maximilian Huber, Johannes Najjar, Kate Stewart, Steffen Weber, and Andreas Würl. The FOSSology Project: 10 Years Of License Scanning. Journal of Open Law, Technology & Society, (9)1:9-18, 2018. [PUMA: software tools licensing] URL

Ricardo Amorim, João Aguiar Castro, João Rocha, and Cristina Ribeiro. LabTablet: Semantic Metadata Collection on a Multi-domain Laboratory Notebook. Communications in Computer and Information Science, (478):193-205, November 2014. [PUMA: forschungsdaten metadata ontologie eln tools]

Björn Schembera. Like a rainbow in the dark: metadata annotation for HPC applications in the age of dark data. In Hamid Arabnia (Eds.), The Journal of Supercomputing, 2021. [PUMA: forschungsdaten hpc-computing metadata tools automated] URL

Pierre Tremouilhac, Chia-Lin Lin, Pei-Chi Huang, Yu-Chieh Huang, An Nguyen, Nicole Jung, Felix Bach, Robert Ulrich, Bernhard Neumair, Achim Streit, and Stefan Bräse. The Repository Chemotion: Infrastructure for Sustainable Research in Chemistry. April 2020. [PUMA: chemie forschungsdaten tools repository] URL