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Visualization methods and support vector machines as tools for determining markers in models of heterogeneous populations: Proapoptotic signaling as a case study

J. Hasenauer, J. Heinrich, M. Doszczak, P. Scheurich, D. Weiskopf, and F. Allgöwer. Proc. 8th Int. Workshop on Computational Systems Biology (WCSB), page 61-64. Zürich, Switzerland, Tampere International Center for Signal Processing, (2011)

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Model-based design of osteoblast differentiation stimuliD. Schittler, S. Waldherr, J. Hasenauer, T. Hauk, A. Hausser, K. Pfizenmaier, and F. Allgöwer. Stem Cell Congress, Dresden, Germany, (July 2010)Cell differentiation modeled via a coupled two-switch regulatory networkD. Schittler, J. Hasenauer, F. Allgöwer, and S. Waldherr. Chaos, 20 (4): 1-9 (2010)Determinants of robustness in spindle assembly checkpoint signallingS. Heinrich, E. Geissen, J. Kamenz, S. Trautmann, C. Widmer, P. Drewe, M. Knop, N. Radde, J. Hasenauer, and S. Hauf. Nat. Cell. Biol., 15 (11): 1328-1339 (2014)Global uncertainty analysis for a model of TNF-induced NF-$\kappa$B signallingS. Waldherr, J. Hasenauer, M. Doszczak, P. Scheurich, and F. Allgöwer. Advances in the Theory of Control, Signals and Systems with Physical Modeling, volume 407 of Lecture Notes in Control and Information Sciences, Springer Berlin / Heidelberg, (2011)Set based uncertainty analysis and parameter estimation of biological networks with the BioSDP toolboxS. Waldherr, J. Hasenauer, and F. Allgöwer. Proc. 9th Int. Workshop on Computational Systems Biology (WCSB), Ulm, Germany, (2012)Modeling and parameter estimation for heterogeneous cell populationsJ. Hasenauer. Institute for Systems Theory and Automatic Control, University of Stuttgart, Stuttgart, Germany, (2013)Density-based modeling and identification of biochemical networks in cell populationsJ. Hasenauer, S. Waldherr, M. Doszczak, P. Scheurich, and F. Allgöwer. IFAC Proceedings Volumes (IFAC-PapersOnline), 9 (PART 1): 320--325 (February 2010)Computation of the posterior entropy in a Bayesian framework for parameter estimation in biological networksA. Kramer, J. Hasenauer, F. Allgöwer, and N. Radde. IEEE Multi Conference on Systems and Control, (2010)Density-based modeling and identification of biochemical networks in cell populationsJ. Hasenauer, S. Waldherr, M. Doszczak, P. Scheurich, and F. Allgöwer. Proc. of 9th Int. Symp. on Dynamics and Control of Process Syst. (DYCOPS), Leuven, Belgium, (2010)Guaranteed Steady-State Bounds for Uncertain Chemical ProcessesJ. Hasenauer, P. Rumschinski, S. Waldherr, S. Borchers, F. Allgöwer, and R. Findeisen. In Proc. of the International Symposium on Advanced Control of Chemical Processes, (2009)