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Unfortunately, most applications in computational biology are highly computeintensive and associated with extensive computing times. Biological problems of interest are often not treatable with traditional simulation models on conventional multi-core CPU systems. This interdisciplinary work introduces a new multi-timescale simulation model for apoptotic receptor-clustering and a new parallel evaluation algorithm that exploits the computational performance of heterogeneous CPU-GPU computing systems. For this purpose, the different dynamics involved in receptor-clustering are separated and simulated on two timescales. 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