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Bhattacharya" ], "authors": [ {"first" : "S.", "last" : "Dustdar"}, {"first" : "K.", "last" : "Bhattacharya"} ], "volume": "15","number": "3","pages": "64-69", "issn" : "1089-7801", "doi" : "10.1109/MIC.2011.68", "bibtexKey": "dustdar2011social" } , { "type" : "Publication", "id" : "https://puma.ub.uni-stuttgart.de/bibtex/20c5417ac76a0927bb4040198bb5ad0d6/hermann", "tags" : [ "workflow","reproducibility","metadaten" ], "intraHash" : "0c5417ac76a0927bb4040198bb5ad0d6", "interHash" : "0a245a2f3e07d4237f4673010f11f407", "label" : "Reproducibility of execution environments in computational science using Semantics and Clouds", "user" : "hermann", "description" : "Reproducibility of execution environments in computational science using Semantics and Clouds - ScienceDirect", "date" : "2018-05-24 10:44:08", "changeDate" : "2018-05-24 08:44:08", "count" : 1, "pub-type": "article", "journal": "Future Generation Computer Systems", "year": "2017", "url": "http://www.sciencedirect.com/science/article/pii/S0167739X16000029", "author": [ "Idafen Santana-Perez","Rafael Ferreira da Silva","Mats Rynge","Ewa Deelman","María S. Pérez-Hernández","Oscar Corcho" ], "authors": [ {"first" : "Idafen", "last" : "Santana-Perez"}, {"first" : "Rafael Ferreira", "last" : "da Silva"}, {"first" : "Mats", "last" : "Rynge"}, {"first" : "Ewa", "last" : "Deelman"}, {"first" : "María S.", "last" : "Pérez-Hernández"}, {"first" : "Oscar", "last" : "Corcho"} ], "volume": "67","pages": "354 - 367","abstract": "In the past decades, one of the most common forms of addressing reproducibility in scientific workflow-based computational science has consisted of tracking the provenance of the produced and published results. Such provenance allows inspecting intermediate and final results, improves understanding, and permits replaying a workflow execution. Nevertheless, this approach does not provide any means for capturing and sharing the very valuable knowledge about the experimental equipment of a computational experiment, i.e., the execution environment in which the experiments are conducted. In this work, we propose a novel approach based on semantic vocabularies that describes the execution environment of scientific workflows, so as to conserve it. We define a process for documenting the workflow application and its related management system, as well as their dependencies. Then we apply this approach over three different real workflow applications running in three distinct scenarios, using public, private, and local Cloud platforms. In particular, we study one astronomy workflow and two life science workflows for genomic information analysis. Experimental results show that our approach can reproduce an equivalent execution environment of a predefined virtual machine image on all evaluated computing platforms.", "issn" : "0167-739X", "doi" : "https://doi.org/10.1016/j.future.2015.12.017", "bibtexKey": "SANTANAPEREZ2017354" } , { "type" : "Publication", "id" : "https://puma.ub.uni-stuttgart.de/bibtex/2cb6c0ca6316c2d9804adeed71c8c71e4/hermann", "tags" : [ "forschungsdaten","workflow","roar" ], "intraHash" : "cb6c0ca6316c2d9804adeed71c8c71e4", "interHash" : "cff36b7478d93cbcb735fbca7c36a37a", "label" : "Workflow-centric research objects: First class citizens in scholarly discourse.", "user" : "hermann", "description" : "Workflow-centric research objects: First class citizens in scholarly discourse. - Archivo Digital UPM", "date" : "2018-05-24 10:38:48", "changeDate" : "2018-05-24 08:38:48", "count" : 1, "pub-type": "inproceedings", "booktitle": "Proceedings of Workshop on the Semantic Publishing", "year": "2012", "url": "http://oa.upm.es/20401/", "author": [ "Oscar Corcho","Daniel Garijo Verdejo","K. 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De", "last" : "Roure"}, {"first" : "C.", "last" : "Goble"} ], "pages": "1--12","abstract": "A workflow-centric research object bundles a workflow, the provenance of the results obtained by its enactment, other digital objects that are relevant for the experiment (papers, datasets, etc.), and annotations that semantically describe all these objects. In this paper, we propose a model to specify workflow-centric research objects, and show how the model can be grounded using semantic technologies and existing vocabularies, in particular the Object Reuse and Exchange (ORE) model and the Annotation Ontology (AO).We describe the life-cycle of a research object, which resembles the life-cycle of a scienti?c experiment.", "bibtexKey": "upm20401" } , { "type" : "Publication", "id" : "https://puma.ub.uni-stuttgart.de/bibtex/2bcaf029e96c6a6cc9c5514c78e25fe67/hermann", "tags" : [ "workflow","obib" ], "intraHash" : "bcaf029e96c6a6cc9c5514c78e25fe67", "interHash" : "8fb6d4f3b49771202bcb236eb4eaf1c7", "label" : "Workflow-based Integration: Grundlagen, Technologien, Management", "user" : "hermann", "description" : "", "date" : "2018-02-26 17:15:29", "changeDate" : "2018-02-28 10:31:24", "count" : 1, "pub-type": "book", "publisher":"Springer","address":"Berlin", "year": "2005", "url": "", "author": [ "Joachim Müller" ], "authors": [ {"first" : "Joachim", "last" : "Müller"} ], "isbn" : "3-540-20439-3", "doi" : "https://doi.org/10.1007/b138228", "bibtexKey": "noauthororeditor" } , { "type" : "Publication", "id" : "https://puma.ub.uni-stuttgart.de/bibtex/2cee6beee13cb8926a81fd68609095f76/hermann", "tags" : [ "forschungsdaten","systems","management","software","Workflow","processing","workflowTracking" ], "intraHash" : "cee6beee13cb8926a81fd68609095f76", "interHash" : "d2e5fb161c8874dfbde96a79d3a6e0e7", "label" : "A characterization of workflow management systems for extreme-scale applications", "user" : "hermann", "description" : "", "date" : "2018-02-14 21:53:58", "changeDate" : "2018-02-14 20:53:58", "count" : 2, "pub-type": "article", "journal": "Future Generation Computer Systems", "year": "2017", "url": "http://www.sciencedirect.com/science/article/pii/S0167739X17302510", "author": [ "Rafael Ferreira da Silva","Rosa Filgueira","Ilia Pietri","Ming Jiang","Rizos Sakellariou","Ewa Deelman" ], "authors": [ {"first" : "Rafael Ferreira", "last" : "da Silva"}, {"first" : "Rosa", "last" : "Filgueira"}, {"first" : "Ilia", "last" : "Pietri"}, {"first" : "Ming", "last" : "Jiang"}, {"first" : "Rizos", "last" : "Sakellariou"}, {"first" : "Ewa", "last" : "Deelman"} ], "volume": "75","pages": "228 - 238", "issn" : "0167-739X", "doi" : "https://doi.org/10.1016/j.future.2017.02.026", "bibtexKey": "dasilva2017characterization" } ] }