{ "types" : { "Bookmark" : { "pluralLabel" : "Bookmarks" }, "Publication" : { "pluralLabel" : "Publications" }, "GoldStandardPublication" : { "pluralLabel" : "GoldStandardPublications" }, "GoldStandardBookmark" : { "pluralLabel" : "GoldStandardBookmarks" }, "Tag" : { "pluralLabel" : "Tags" }, "User" : { "pluralLabel" : "Users" }, "Group" : { "pluralLabel" : "Groups" }, "Sphere" : { "pluralLabel" : "Spheres" } }, "properties" : { "count" : { "valueType" : "number" }, "date" : { "valueType" : "date" }, "changeDate" : { "valueType" : "date" }, "url" : { "valueType" : "url" }, "id" : { "valueType" : "url" }, "tags" : { "valueType" : "item" }, "user" : { "valueType" : "item" } }, "items" : [ { "type" : "Publication", "id" : "https://puma.ub.uni-stuttgart.de/bibtex/278be7a8511885a12e0210c7694fe2d34/bselent", "tags" : [ "ELN","FDM" ], "intraHash" : "78be7a8511885a12e0210c7694fe2d34", "interHash" : "eeaf96307dc1e3f585be592c35456e9e", "label" : "Electronic lab notebooks: can they replace paper?", "user" : "bselent", "description" : "Electronic lab notebooks: can they replace paper? | Journal of Cheminformatics | Full Text", "date" : "2024-11-20 11:20:16", "changeDate" : "2024-11-20 11:20:16", "count" : 3, "pub-type": "article", "journal": "Journal of Cheminformatics", "year": "2017", "url": "https://doi.org/10.1186/s13321-017-0221-3", "author": [ "Samantha Kanza","Cerys Willoughby","Nicholas Gibbins","Richard Whitby","Jeremy Graham Frey","Jana Erjavec","Klemen Zupancic","Matjaz Hren","Katarina Kovac" ], "authors": [ {"first" : "Samantha", "last" : "Kanza"}, {"first" : "Cerys", "last" : "Willoughby"}, {"first" : "Nicholas", "last" : "Gibbins"}, {"first" : "Richard", "last" : "Whitby"}, {"first" : "Jeremy Graham", "last" : "Frey"}, {"first" : "Jana", "last" : "Erjavec"}, {"first" : "Klemen", "last" : "Zupancic"}, {"first" : "Matjaz", "last" : "Hren"}, {"first" : "Katarina", "last" : "Kovac"} ], "volume": "9","number": "1","pages": "31","abstract": "Despite the increasingly digital nature of society there are some areas of research that remain firmly rooted in the past; in this case the laboratory notebook, the last remaining paper component of an experiment. Countless electronic laboratory notebooks (ELNs) have been created in an attempt to digitise record keeping processes in the lab, but none of them have become a `key player' in the ELN market, due to the many adoption barriers that have been identified in previous research and further explored in the user studies presented here. The main issues identified are the cost of the current available ELNs, their ease of use (or lack of it) and their accessibility issues across different devices and operating systems. Evidence suggests that whilst scientists willingly make use of generic notebooking software, spreadsheets and other general office and scientific tools to aid their work, current ELNs are lacking in the required functionality to meet the needs of the researchers. In this paper we present our extensive research and user study results to propose an ELN built upon a pre-existing cloud notebook platform that makes use of accessible popular scientific software and semantic web technologies to help overcome the identified barriers to adoption.", "issn" : "1758-2946", "doi" : "10.1186/s13321-017-0221-3", "bibtexKey": "Kanza2017" } , { "type" : "Publication", "id" : "https://puma.ub.uni-stuttgart.de/bibtex/269bea0c887d0193a7d3b3904d05af6e1/bselent", "tags" : [ "ELN","FDM" ], "intraHash" : "69bea0c887d0193a7d3b3904d05af6e1", "interHash" : "6ee40117cc78a7ffb141fd820d935487", "label" : "A quick guide for using Microsoft OneNote as an electronic laboratory notebook", "user" : "bselent", "description" : "A quick guide for using Microsoft OneNote as an electronic laboratory notebook | PLOS Computational Biology", "date" : "2024-11-20 11:18:53", "changeDate" : "2024-11-20 11:18:53", "count" : 2, "pub-type": "article", "journal": "PLOS Computational Biology","publisher":"Public Library of Science", "year": "2019", "url": "https://doi.org/10.1371/journal.pcbi.1006918", "author": [ "Santiago Guerrero","Andrés López-Cortés","Jennyfer M. García-Cárdenas","Pablo Saa","Alberto Indacochea","Isaac Armendáriz-Castillo","Ana Karina Zambrano","Verónica Yumiceba","Andy Pérez-Villa","Patricia Guevara-Ramírez","Oswaldo Moscoso-Zea","Joel Paredes","Paola E. Leone","César Paz-y Miño" ], "authors": [ {"first" : "Santiago", "last" : "Guerrero"}, {"first" : "Andrés", "last" : "López-Cortés"}, {"first" : "Jennyfer M.", "last" : "García-Cárdenas"}, {"first" : "Pablo", "last" : "Saa"}, {"first" : "Alberto", "last" : "Indacochea"}, {"first" : "Isaac", "last" : "Armendáriz-Castillo"}, {"first" : "Ana Karina", "last" : "Zambrano"}, {"first" : "Verónica", "last" : "Yumiceba"}, {"first" : "Andy", "last" : "Pérez-Villa"}, {"first" : "Patricia", "last" : "Guevara-Ramírez"}, {"first" : "Oswaldo", "last" : "Moscoso-Zea"}, {"first" : "Joel", "last" : "Paredes"}, {"first" : "Paola E.", "last" : "Leone"}, {"first" : "César", "last" : "Paz-y Miño"} ], "volume": "15","number": "5","pages": "1-9","abstract": "Scientific data recording and reporting systems are of a great interest for endorsing reproducibility and transparency practices among the scientific community. Current research generates large datasets that can no longer be documented using paper lab notebooks (PLNs). In this regard, electronic laboratory notebooks (ELNs) could be a promising solution to replace PLNs and promote scientific reproducibility and transparency. We previously analyzed five ELNs and performed two survey-based studies to implement an ELN in a biomedical research institute. Among the ELNs tested, we found that Microsoft OneNote presents numerous features related to ELN best functionalities. In addition, both surveyed groups preferred OneNote over a scientifically designed ELN (PerkinElmer Elements). However, OneNote remains a general note-taking application and has not been designed for scientific purposes. We therefore provide a quick guide to adapt OneNote to an ELN workflow that can also be adjusted to other nonscientific ELNs.", "doi" : "10.1371/journal.pcbi.1006918", "bibtexKey": "10.1371/journal.pcbi.1006918" } , { "type" : "Publication", "id" : "https://puma.ub.uni-stuttgart.de/bibtex/249aa360b178497c831c6c7eee3cb127f/bselent", "tags" : [ "eln","rdm" ], "intraHash" : "49aa360b178497c831c6c7eee3cb127f", "interHash" : "4561ecc5df1de387f08be36301311f9b", "label" : "Considerations for implementing electronic laboratory notebooks in an academic research environment", "user" : "bselent", "description" : "Considerations for implementing electronic laboratory notebooks in an academic research environment | Nature Protocols", "date" : "2024-05-21 14:12:27", "changeDate" : "2024-05-21 14:22:31", "count" : 2, "pub-type": "article", "journal": "Nature Protocols", "year": "2022", "url": "https://doi.org/10.1038/s41596-021-00645-8", "author": [ "Stuart G. Higgins","Akemi A. Nogiwa-Valdez","Molly M. Stevens" ], "authors": [ {"first" : "Stuart G.", "last" : "Higgins"}, {"first" : "Akemi A.", "last" : "Nogiwa-Valdez"}, {"first" : "Molly M.", "last" : "Stevens"} ], "volume": "17","number": "2","pages": "179--189","abstract": "As research becomes predominantly digitalized, scientists have the option of using electronic laboratory notebooks to record and access entries. These systems can more readily meet volume, complexity, accessibility and preservation requirements than paper notebooks. Although the technology can yield many benefits, these can be realized only by choosing a system that properly fulfills the requirements of a given context. This review explores the factors that should be considered when introducing electronic laboratory notebooks to an academically focused research group. We cite pertinent studies and discuss our own experience implementing a system within a multidisciplinary research environment. We also consider how the required financial and time investment is shared between individuals and institutions. Finally, we discuss how electronic laboratory notebooks fit into the broader context of research data management. This article is not a product review; it provides a framework for both the initial consideration of an electronic laboratory notebook and the evaluation of specific software packages.", "issn" : "1750-2799", "doi" : "10.1038/s41596-021-00645-8", "bibtexKey": "Higgins2022" } , { "type" : "Publication", "id" : "https://puma.ub.uni-stuttgart.de/bibtex/2ca9be2ff967a9fc2f751cf4381e32f44/diglezakis", "tags" : [ "forschungsdaten","software","eln","tools" ], "intraHash" : "ca9be2ff967a9fc2f751cf4381e32f44", "interHash" : "0ba474968da3f8cca425a19aaa93ca4a", "label" : "Kadi4Mat - Karlsruhe Data Infrastructure for Materials Science", "user" : "diglezakis", "description" : "Kadi4Mat - Karlsruhe Data Infrastructure for Materials Science", "date" : "2023-10-24 11:32:47", "changeDate" : "2023-10-24 11:32:47", "count" : 2, "pub-type": "dataset", "publisher":"Zenodo", "year": "2023", "url": "https://zenodo.org/doi/10.5281/zenodo.8424794", "author": [ "Michael Selzer" ], "authors": [ {"first" : "Michael", "last" : "Selzer"} ], "copyright" : "Creative Commons Attribution 4.0 International", "language" : "en", "doi" : "10.5281/ZENODO.8424794", "bibtexKey": "https://doi.org/10.5281/zenodo.8424794" } , { "type" : "Publication", "id" : "https://puma.ub.uni-stuttgart.de/bibtex/289b88eb3feb85e97a970bd606d979e78/diglezakis", "tags" : [ "forschungsdaten","metadata","ontologie","eln","tools" ], "intraHash" : "89b88eb3feb85e97a970bd606d979e78", "interHash" : "6b95aa7fa053f45d56eebe5cd84a28cc", "label" : "LabTablet: Semantic Metadata Collection on a Multi-domain Laboratory Notebook", "user" : "diglezakis", "description" : "", "date" : "2021-02-15 07:13:52", "changeDate" : "2021-02-15 06:13:52", "count" : 1, "pub-type": "inproceedings", "journal": "Communications in Computer and Information Science", "year": "2014", "url": "", "author": [ "Ricardo Amorim","João Aguiar Castro","João Rocha","Cristina Ribeiro" ], "authors": [ {"first" : "Ricardo", "last" : "Amorim"}, {"first" : "João", "last" : "Aguiar Castro"}, {"first" : "João", "last" : "Rocha"}, {"first" : "Cristina", "last" : "Ribeiro"} ], "volume": "478","pages": "193-205", "doi" : "10.1007/978-3-319-13674-5_19", "bibtexKey": "inproceedings" } ] }