PUMA publications for /group/researchcode/Toolshttps://puma.ub.uni-stuttgart.de/group/researchcode/ToolsPUMA RSS feed for /group/researchcode/Tools2026-04-24T04:47:48+02:00Ontology-based production simulation with ontologysimhttps://puma.ub.uni-stuttgart.de/bibtex/231f0f51ee57c6fec6473450a45d9b794/diglezakisdiglezakis2026-03-30T17:00:01+02:00forschungsdaten metadata ontologie simulation tools <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Marvin Carl May" itemprop="url" href="/person/1eb02d63bcee325e8189ebba29187d991/author/0"><span itemprop="name">M. May</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Lars Kiefer" itemprop="url" href="/person/1eb02d63bcee325e8189ebba29187d991/author/1"><span itemprop="name">L. Kiefer</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Andreas Kuhnle" itemprop="url" href="/person/1eb02d63bcee325e8189ebba29187d991/author/2"><span itemprop="name">A. Kuhnle</span></a></span>, </span> and <span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Gisela Lanza" itemprop="url" href="/person/1eb02d63bcee325e8189ebba29187d991/author/3"><span itemprop="name">G. Lanza</span></a></span></span>. </span><span class="additional-entrytype-information"><span itemtype="http://schema.org/PublicationIssue" itemscope="itemscope" itemprop="isPartOf"><em><span itemprop="journal">Applied Sciences</span>, </em> <em><span itemtype="http://schema.org/PublicationVolume" itemscope="itemscope" itemprop="isPartOf"><span itemprop="volumeNumber">12 </span></span>(<span itemprop="issueNumber">3</span>):
<span itemprop="pagination">1608</span></em> </span>(<em><span>2022<meta content="2022" itemprop="datePublished"/></span></em>)</span>Mon Mar 30 17:00:01 CEST 2026Applied Sciences31608Ontology-based production simulation with ontologysim122022forschungsdaten metadata ontologie simulation tools KONDA: An LLM-based Tool for Semantic Annotation
and Knowledge Graph Creation Using Ontologies for
Research Datahttps://puma.ub.uni-stuttgart.de/bibtex/2fd766b4d17a1867d99f5c2444b6f26c6/diglezakisdiglezakis2025-10-09T14:34:45+02:00forschungsdaten metadata AI tools LLM <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Soo-Yon Kim" itemprop="url" href="/person/1036177862ba9a7384486e5139d629765/author/0"><span itemprop="name">S. Kim</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Martin Görz" itemprop="url" href="/person/1036177862ba9a7384486e5139d629765/author/1"><span itemprop="name">M. Görz</span></a></span>, </span> and <span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Sandra Geisler" itemprop="url" href="/person/1036177862ba9a7384486e5139d629765/author/2"><span itemprop="name">S. Geisler</span></a></span></span>. </span><span class="additional-entrytype-information">(<em><span>August 2025<meta content="August 2025" itemprop="datePublished"/></span></em>)</span>Thu Oct 09 14:34:45 CEST 202508KONDA: An LLM-based Tool for Semantic Annotation
and Knowledge Graph Creation Using Ontologies for
Research Data
2025forschungsdaten metadata AI tools LLM WorkflowHub: a registry for computational workflowshttps://puma.ub.uni-stuttgart.de/bibtex/248ea7607d3bbd5f89878a24069dd16d2/diglezakisdiglezakis2025-06-30T14:41:02+02:00registry forschungsdaten metadata researchObjects tools <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Ove Johan Ragnar Gustafsson" itemprop="url" href="/person/14a284e3b181ffc08067121e75f4282f6/author/0"><span itemprop="name">O. Gustafsson</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Sean R. Wilkinson" itemprop="url" href="/person/14a284e3b181ffc08067121e75f4282f6/author/1"><span itemprop="name">S. Wilkinson</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Finn Bacall" itemprop="url" href="/person/14a284e3b181ffc08067121e75f4282f6/author/2"><span itemprop="name">F. Bacall</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Stian Soiland-Reyes" itemprop="url" href="/person/14a284e3b181ffc08067121e75f4282f6/author/3"><span itemprop="name">S. Soiland-Reyes</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Simone Leo" itemprop="url" href="/person/14a284e3b181ffc08067121e75f4282f6/author/4"><span itemprop="name">S. Leo</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Luca Pireddu" itemprop="url" href="/person/14a284e3b181ffc08067121e75f4282f6/author/5"><span itemprop="name">L. Pireddu</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Stuart Owen" itemprop="url" href="/person/14a284e3b181ffc08067121e75f4282f6/author/6"><span itemprop="name">S. Owen</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Nick Juty" itemprop="url" href="/person/14a284e3b181ffc08067121e75f4282f6/author/7"><span itemprop="name">N. Juty</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="José M. Fernández" itemprop="url" href="/person/14a284e3b181ffc08067121e75f4282f6/author/8"><span itemprop="name">J. Fernández</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Tom Brown" itemprop="url" href="/person/14a284e3b181ffc08067121e75f4282f6/author/9"><span itemprop="name">T. Brown</span></a></span></span> and 5 other author(s). </span><span class="additional-entrytype-information"><span itemtype="http://schema.org/PublicationIssue" itemscope="itemscope" itemprop="isPartOf"><em><span itemprop="journal">Scientific Data</span>, </em> <em><span itemtype="http://schema.org/PublicationVolume" itemscope="itemscope" itemprop="isPartOf"><span itemprop="volumeNumber">12 </span></span>(<span itemprop="issueNumber">1</span>):
<span itemprop="pagination">837--</span></em> </span>(<em><span>2025<meta content="2025" itemprop="datePublished"/></span></em>)</span>Mon Jun 30 14:41:02 CEST 2025Scientific Data1837--WorkflowHub: a registry for computational workflows122025registry forschungsdaten metadata researchObjects tools The rising popularity of computational workflows is driven by the need for repetitive and scalable data processing, sharing of processing know-how, and transparent methods. As both combined records of analysis and descriptions of processing steps, workflows should be reproducible, reusable, adaptable, and available. Workflow sharing presents opportunities to reduce unnecessary reinvention, promote reuse, increase access to best practice analyses for non-experts, and increase productivity. In reality, workflows are scattered and difficult to find, in part due to the diversity of available workflow engines and ecosystems, and because workflow sharing is not yet part of research practice. WorkflowHub provides a unified registry for all computational workflows that links to community repositories, and supports both the workflow lifecycle and making workflows findable, accessible, interoperable, and reusable (FAIR). By interoperating with diverse platforms, services, and external registries, WorkflowHub adds value by supporting workflow sharing, explicitly assigning credit, enhancing FAIRness, and promoting workflows as scholarly artefacts. The registry has a global reach, with hundreds of research organisations involved, and more than 800 workflows registered.Efficient Data Curation by Automating Workflowshttps://puma.ub.uni-stuttgart.de/bibtex/21aa8af01670c053a98bb93daa5f48efa/diglezakisdiglezakis2025-06-25T09:33:11+02:00myown forschungsdaten metadata curation tools <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Florian Fritze" itemprop="url" href="/person/1cbfc8b722f76bbcf3f4c5f48a6f2cf96/author/0"><span itemprop="name">F. Fritze</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Björn Selent" itemprop="url" href="/person/1cbfc8b722f76bbcf3f4c5f48a6f2cf96/author/1"><span itemprop="name">B. Selent</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Karoline Weinspach" itemprop="url" href="/person/1cbfc8b722f76bbcf3f4c5f48a6f2cf96/author/2"><span itemprop="name">K. Weinspach</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Sarbani Roy" itemprop="url" href="/person/1cbfc8b722f76bbcf3f4c5f48a6f2cf96/author/3"><span itemprop="name">S. Roy</span></a></span>, </span> and <span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Dorothea Iglezakis" itemprop="url" href="/person/1cbfc8b722f76bbcf3f4c5f48a6f2cf96/author/4"><span itemprop="name">D. Iglezakis</span></a></span></span>. </span><span class="additional-entrytype-information"><span itemtype="http://schema.org/Book" itemscope="itemscope" itemprop="isPartOf"><em><span itemprop="name">E-Science-Tage 2025 Research Data Management: Challenges in a Changing World</span>, </em></span>(<em><span>heiBOOKS 2025<meta content="heiBOOKS 2025" itemprop="datePublished"/></span></em>)</span>Wed Jun 25 09:33:11 CEST 2025E-Science-Tage 2025 Research Data Management: Challenges in a Changing WorldheiBOOKSEfficient Data Curation by Automating Workflows2025myown forschungsdaten metadata curation tools Einführung in Terminologien und
Terminologiedienstehttps://puma.ub.uni-stuttgart.de/bibtex/291bd3f5669297aedbf01e95797b3e19e/diglezakisdiglezakis2025-04-29T16:45:30+02:00terminologies forschungsdaten metadata pid tools <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Roman Baum" itemprop="url" href="/person/1cf15428b5e880a915b9fb77a20b879ae/author/0"><span itemprop="name">R. Baum</span></a></span></span>. </span><span class="additional-entrytype-information">(<em><span>February 2025<meta content="February 2025" itemprop="datePublished"/></span></em>)</span>Tue Apr 29 16:45:30 CEST 202502Einführung in Terminologien und
Terminologiedienste
2025terminologies forschungsdaten metadata pid tools Knowledge Graph Visualization: Challenges, Framework, and Implementationhttps://puma.ub.uni-stuttgart.de/bibtex/209f16e8fe25f861e62651d003b10cb6c/diglezakisdiglezakis2024-12-06T13:34:57+01:00visualization tools knowledgegraph <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Rungsiman Nararatwong" itemprop="url" href="/person/1b8943f68661a4ae10db86dcb925d6494/author/0"><span itemprop="name">R. Nararatwong</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Natthawut Kertkeidkachorn" itemprop="url" href="/person/1b8943f68661a4ae10db86dcb925d6494/author/1"><span itemprop="name">N. Kertkeidkachorn</span></a></span>, </span> and <span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Ryutaro Ichise" itemprop="url" href="/person/1b8943f68661a4ae10db86dcb925d6494/author/2"><span itemprop="name">R. Ichise</span></a></span></span>. </span><span class="additional-entrytype-information"><span itemtype="http://schema.org/Book" itemscope="itemscope" itemprop="isPartOf"><em><span itemprop="name">2020 IEEE Third International Conference on Artificial Intelligence and Knowledge Engineering (AIKE)</span>, </em></span><em>page <span itemprop="pagination">174-178</span>. </em>(<em><span>December 2020<meta content="December 2020" itemprop="datePublished"/></span></em>)</span>Fri Dec 06 13:34:57 CET 20242020 IEEE Third International Conference on Artificial Intelligence and Knowledge Engineering (AIKE)12174-178Knowledge Graph Visualization: Challenges, Framework, and Implementation2020visualization tools knowledgegraph A knowledge graph (KG) is a rich resource representing real-world facts. Visualizing a knowledge graph helps humans gain a deep understanding of the facts, leading to new insights and concepts. However, the massive and complex nature of knowledge graphs has brought many longstanding challenges, especially to attract non-expert users. This paper discusses these challenges; we turned them into a generic knowledge-graph visualization framework, namely KGViz, consisting of four dimensions: modularity, intuitive user interface, performance, and access control. Our implementation of KGViz is a high-capacity, extendable, and scalable KG visualizer, which we designed to promotes community contributions.Knowledge Graph Visualization: Challenges, Framework, and Implementation | IEEE Conference Publication | IEEE XploreLike a rainbow in the dark: metadata annotation for HPC applications in the age of dark datahttps://puma.ub.uni-stuttgart.de/bibtex/228cff38a293a8f2376e3488387b88297/diglezakisdiglezakis2024-12-05T15:34:23+01:00metadata engmeta tools extraction <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Björn Schembera" itemprop="url" href="/person/1b6eac40c2b6d9e29e99c8eece7d9e01b/author/0"><span itemprop="name">B. Schembera</span></a></span></span>. </span><span class="additional-entrytype-information"><span itemtype="http://schema.org/PublicationIssue" itemscope="itemscope" itemprop="isPartOf"><em><span itemprop="journal">The Journal of Supercomputing</span>, </em> <em><span itemtype="http://schema.org/PublicationVolume" itemscope="itemscope" itemprop="isPartOf"><span itemprop="volumeNumber">77 </span></span>(<span itemprop="issueNumber">8</span>):
<span itemprop="pagination">8946--8966</span></em> </span>(<em><span>2021<meta content="2021" itemprop="datePublished"/></span></em>)</span>Thu Dec 05 15:34:23 CET 2024The Journal of Supercomputing88946--8966Like a rainbow in the dark: metadata annotation for HPC applications in the age of dark data772021metadata engmeta tools extraction The deluge of dark data is about to happen. Lacking data management capabilities, especially in the field of supercomputing, and missing data documentation (i.e., missing metadata annotation) constitute a major source of dark data. The present work contributes to addressing this challenge by presenting ExtractIng, a generic automated metadata extraction toolkit. Existing metadata information of simulation output files scattered through the file system, can be aggregated, parsed and converted to the EngMeta metadata model. Use cases from computational engineering are considered to demonstrate the viability of ExtractIng. The evaluation results show that the metadata extraction is simulation-code independent in the sense that it can handle data outputs from various fields of science, is easy to integrate into simulation workflows and compatible with a multitude of computational environments.Kadi4Mat - Karlsruhe Data Infrastructure for Materials Sciencehttps://puma.ub.uni-stuttgart.de/bibtex/2ca9be2ff967a9fc2f751cf4381e32f44/diglezakisdiglezakis2023-10-24T11:32:47+02:00forschungsdaten software eln tools <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Michael Selzer" itemprop="url" href="/person/10ba474968da3f8cca425a19aaa93ca4a/author/0"><span itemprop="name">M. Selzer</span></a></span></span>. </span><span class="additional-entrytype-information">(<em><span>2023<meta content="2023" itemprop="datePublished"/></span></em>)</span>Tue Oct 24 11:32:47 CEST 2023Kadi4Mat - Karlsruhe Data Infrastructure for Materials Science2023forschungsdaten software eln tools Kadi4Mat - Karlsruhe Data Infrastructure for Materials ScienceDLR-SC/prov-comics: QS PROV Comics Prototype - Big
fixeshttps://puma.ub.uni-stuttgart.de/bibtex/25ec4063de2265c2e33979d8966072816/diglezakisdiglezakis2023-09-22T09:24:10+02:00forschungsdaten provenance metadata software comics tools javascript <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Stefan Bieliauskas" itemprop="url" href="/person/140418dd0c92a9f6c92f90ca2c6db888d/author/0"><span itemprop="name">S. Bieliauskas</span></a></span>, </span> and <span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Andreas Schreiber" itemprop="url" href="/person/140418dd0c92a9f6c92f90ca2c6db888d/author/1"><span itemprop="name">A. Schreiber</span></a></span></span>. </span><span class="additional-entrytype-information">(<em><span>April 2017<meta content="April 2017" itemprop="datePublished"/></span></em>)</span>Fri Sep 22 09:24:10 CEST 202304{DLR-SC/prov-comics: QS PROV Comics Prototype - Big
fixes}2017forschungsdaten provenance metadata software comics tools javascript DLR-SC/prov-comics: QS PROV Comics Prototype - Big fixes | ZenodoMoving towards a General Metadata Extraction Solution for Research Data with State-of-the-Art Methods.https://puma.ub.uni-stuttgart.de/bibtex/21aca149185596280b6b09cf94af150d2/diglezakisdiglezakis2023-09-14T14:04:57+02:00forschungsdaten metadata harvesting similarity tools <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Benedikt Heinrichs" itemprop="url" href="/person/1dbeed82063ffcac515b64fb4261dac6b/author/0"><span itemprop="name">B. Heinrichs</span></a></span>, </span> and <span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Marius Politze" itemprop="url" href="/person/1dbeed82063ffcac515b64fb4261dac6b/author/1"><span itemprop="name">M. Politze</span></a></span></span>. </span><span class="additional-entrytype-information"><span itemtype="http://schema.org/Book" itemscope="itemscope" itemprop="isPartOf"><em><span itemprop="name">KDIR</span>, </em></span><em>page <span itemprop="pagination">227--234</span>. </em>(<em><span>2020<meta content="2020" itemprop="datePublished"/></span></em>)</span>Thu Sep 14 14:04:57 CEST 2023KDIR227--234Moving towards a General Metadata Extraction Solution for Research Data with State-of-the-Art Methods.2020forschungsdaten metadata harvesting similarity tools Data Lakes, Clouds, and Commons: A Review of Platforms for Analyzing and Sharing Genomic Datahttps://puma.ub.uni-stuttgart.de/bibtex/257bb64388d481770c99ea94dc2dc8128/diglezakisdiglezakis2023-06-06T13:28:33+02:00forschungsdaten definition tools <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Robert L Grossman" itemprop="url" href="/person/1f09e45e3e1587d8b4b1a9afdcd169549/author/0"><span itemprop="name">R. Grossman</span></a></span></span>. </span><span class="additional-entrytype-information"><span itemtype="http://schema.org/PublicationIssue" itemscope="itemscope" itemprop="isPartOf"><em><span itemprop="journal">Trends in genetics : TIG</span>, </em> <em><span itemtype="http://schema.org/PublicationVolume" itemscope="itemscope" itemprop="isPartOf"><span itemprop="volumeNumber">35 </span></span>(<span itemprop="issueNumber">3</span>):
<span itemprop="pagination">223--234</span></em> </span>(<em><span>March 2019<meta content="March 2019" itemprop="datePublished"/></span></em>)</span>Tue Jun 06 13:28:33 CEST 2023EnglandTrends in genetics : TIG033223--234Data Lakes, Clouds, and Commons: A Review of Platforms for Analyzing and Sharing Genomic Data352019forschungsdaten definition tools Data commons collate data with cloud computing infrastructure and commonly used software services, tools, and applications to create biomedical resources for the large-scale management, analysis, harmonization, and sharing of biomedical data. Over the past few years, data commons have been used to analyze, harmonize, and share large-scale genomics datasets. Data ecosystems can be built by interoperating multiple data commons. It can be quite labor intensive to curate, import, and analyze the data in a data commons. Data lakes provide an alternative to data commons and simply provide access to data, with the data curation and analysis deferred until later and delegated to those that access the data. We review software platforms for managing, analyzing, and sharing genomic data, with an emphasis on data commons, but also cover data ecosystems and data lakes.Data Lakes, Clouds, and Commons: A Review of Platforms for Analyzing and Sharing Genomic Data - PubMedHigh performance cellular level agent-based simulation with FLAME for the GPUhttps://puma.ub.uni-stuttgart.de/bibtex/2714dca46376651961024e72878db421e/diglezakisdiglezakis2023-04-27T07:50:40+02:00simulations tools <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Paul Richmond" itemprop="url" href="/person/107b8aade355592acdee2e9d30dfeefe2/author/0"><span itemprop="name">P. Richmond</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Dawn Walker" itemprop="url" href="/person/107b8aade355592acdee2e9d30dfeefe2/author/1"><span itemprop="name">D. Walker</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Simon Coakley" itemprop="url" href="/person/107b8aade355592acdee2e9d30dfeefe2/author/2"><span itemprop="name">S. Coakley</span></a></span>, </span> and <span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Daniela Romano" itemprop="url" href="/person/107b8aade355592acdee2e9d30dfeefe2/author/3"><span itemprop="name">D. Romano</span></a></span></span>. </span><span class="additional-entrytype-information"><span itemtype="http://schema.org/PublicationIssue" itemscope="itemscope" itemprop="isPartOf"><em><span itemprop="journal">Briefings in bioinformatics</span>, </em> <em><span itemtype="http://schema.org/PublicationVolume" itemscope="itemscope" itemprop="isPartOf"><span itemprop="volumeNumber">11 </span></span>(<span itemprop="issueNumber">3</span>):
<span itemprop="pagination">334--347</span></em> </span>(<em><span>2010<meta content="2010" itemprop="datePublished"/></span></em>)</span>Thu Apr 27 07:50:40 CEST 2023Briefings in bioinformatics3334--347High performance cellular level agent-based simulation with FLAME for the GPU112010simulations tools An open, modular, and flexible micro X-ray computed tomography system for researchhttps://puma.ub.uni-stuttgart.de/bibtex/2bc429c4fbbc04bfa4eaf525e53aae7e4/diglezakisdiglezakis2023-04-18T07:19:52+02:00sfb1313 x-ray relatedpublication tools <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Matthias Ruf" itemprop="url" href="/person/19548cdcf6f6bf2309ec127bbd90be068/author/0"><span itemprop="name">M. Ruf</span></a></span>, </span> and <span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Holger Steeb" itemprop="url" href="/person/19548cdcf6f6bf2309ec127bbd90be068/author/1"><span itemprop="name">H. Steeb</span></a></span></span>. </span><span class="additional-entrytype-information"><span itemtype="http://schema.org/PublicationIssue" itemscope="itemscope" itemprop="isPartOf"><em><span itemprop="journal">Review of Scientific Instruments</span>, </em> <em><span itemtype="http://schema.org/PublicationVolume" itemscope="itemscope" itemprop="isPartOf"><span itemprop="volumeNumber">91 </span></span>(<span itemprop="issueNumber">11</span>):
<span itemprop="pagination">113102</span></em> </span>(<em><span>2020<meta content="2020" itemprop="datePublished"/></span></em>)</span>Tue Apr 18 07:19:52 CEST 2023Review of Scientific Instruments11113102An open, modular, and flexible micro X-ray computed tomography system for research912020sfb1313 x-ray relatedpublication tools In this paper, a modular and open micro X-ray Computed Tomography (μXRCT) system is presented, which was set up during the last years at the Institute of Applied Mechanics (CE) of the University of Stuttgart and earlier at the Institute of Computational Engineering of Ruhr-University Bochum. The system is characterized by its intrinsic flexibility resulting from the modular and open design on each level and the opportunity to implement advanced experimental in situ setups. On the one hand, the presented work is intended to support researchers interested in setting up an experimental XRCT system for the microstructural characterization of materials. On the other hand, it aims to support scientists confronted with the decision to set up a system on their own or to buy a commercial scanner. In addition to the presentation of the various hardware components and the applied modular software concept, the technical opportunities of the open and modular hard- and software design are demonstrated by implementing a simple and reliable method for the compensation of bad detector pixels to enhance the raw data quality of the projections. A detailed investigation of the performance of the presented system with regard to the achievable spatial resolution is presented. XRCT datasets of three different applications are finally shown and discussed, demonstrating the wide scope of options of the presented system. An open, modular, and flexible micro X-ray computed tomography system for research: Review of Scientific Instruments: Vol 91, No 11A sustainable infrastructure concept for improved accessibility, reusability, and archival of research softwarehttps://puma.ub.uni-stuttgart.de/bibtex/228b301e3b1917db6beaf11d9deb3d44a/diglezakisdiglezakis2023-02-11T12:23:47+01:00forschungsdaten software tools repository <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Timo Koch" itemprop="url" href="/person/1a50cbce91930627b33c1f67316883fe1/author/0"><span itemprop="name">T. Koch</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Dennis Gläser" itemprop="url" href="/person/1a50cbce91930627b33c1f67316883fe1/author/1"><span itemprop="name">D. Gläser</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Anett Seeland" itemprop="url" href="/person/1a50cbce91930627b33c1f67316883fe1/author/2"><span itemprop="name">A. Seeland</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Sarbani Roy" itemprop="url" href="/person/1a50cbce91930627b33c1f67316883fe1/author/3"><span itemprop="name">S. Roy</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Katharina Schulze" itemprop="url" href="/person/1a50cbce91930627b33c1f67316883fe1/author/4"><span itemprop="name">K. Schulze</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Kilian Weishaupt" itemprop="url" href="/person/1a50cbce91930627b33c1f67316883fe1/author/5"><span itemprop="name">K. Weishaupt</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="David Boehringer" itemprop="url" href="/person/1a50cbce91930627b33c1f67316883fe1/author/6"><span itemprop="name">D. Boehringer</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Sibylle Hermann" itemprop="url" href="/person/1a50cbce91930627b33c1f67316883fe1/author/7"><span itemprop="name">S. Hermann</span></a></span>, </span> and <span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Bernd Flemisch" itemprop="url" href="/person/1a50cbce91930627b33c1f67316883fe1/author/8"><span itemprop="name">B. Flemisch</span></a></span></span>. </span><span class="additional-entrytype-information">(<em><span>2023<meta content="2023" itemprop="datePublished"/></span></em>)</span>Sat Feb 11 12:23:47 CET 2023A sustainable infrastructure concept for improved accessibility, reusability, and archival of research software2023forschungsdaten software tools repository [2301.12830] A sustainable infrastructure concept for improved accessibility, reusability, and archival of research softwareThe ReSUS Project - Infrastructure for Sharing Research Softwarehttps://puma.ub.uni-stuttgart.de/bibtex/25783f26516839699e25dd7e4a9b69bfd/diglezakisdiglezakis2022-04-27T17:54:28+02:00myown forschungsdaten metadata software tools repository <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Markus Hirsch" itemprop="url" href="/person/116f506bbd6a7813fb8bcd0dbd0298f8b/author/0"><span itemprop="name">M. Hirsch</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Dorothea Iglezakis" itemprop="url" href="/person/116f506bbd6a7813fb8bcd0dbd0298f8b/author/1"><span itemprop="name">D. Iglezakis</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Frank Leymann" itemprop="url" href="/person/116f506bbd6a7813fb8bcd0dbd0298f8b/author/2"><span itemprop="name">F. Leymann</span></a></span>, </span> and <span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Michael Zimmermann" itemprop="url" href="/person/116f506bbd6a7813fb8bcd0dbd0298f8b/author/3"><span itemprop="name">M. Zimmermann</span></a></span></span>. </span><span class="additional-entrytype-information"><span itemtype="http://schema.org/Book" itemscope="itemscope" itemprop="isPartOf"><em><span itemprop="name">E-Science-Tage 2021: Share Your Research Data</span>, </em><em><span itemprop="publisher">heiBOOKS</span>, </em></span>(<em><span>2022<meta content="2022" itemprop="datePublished"/></span></em>)</span>Wed Apr 27 17:54:28 CEST 2022E-Science-Tage 2021: Share Your Research Data 267-276The ReSUS Project - Infrastructure for Sharing Research Software2022myown forschungsdaten metadata software tools repository E-Science-Tage 2021 - heiBOOKSTowards Easy Vocabulary Drafts with Neologism 2.0https://puma.ub.uni-stuttgart.de/bibtex/2b753181482bd2ef2ce512c73fd0f7eb3/diglezakisdiglezakis2021-10-21T12:10:32+02:00metadata ontologie tools <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Johannes Lipp" itemprop="url" href="/person/1c87c07be01a1933901011d770fb1cde2/author/0"><span itemprop="name">J. Lipp</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Lars Gleim" itemprop="url" href="/person/1c87c07be01a1933901011d770fb1cde2/author/1"><span itemprop="name">L. Gleim</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Michael Cochez" itemprop="url" href="/person/1c87c07be01a1933901011d770fb1cde2/author/2"><span itemprop="name">M. Cochez</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Iraklis Dimitriadis" itemprop="url" href="/person/1c87c07be01a1933901011d770fb1cde2/author/3"><span itemprop="name">I. Dimitriadis</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Hussain Ali" itemprop="url" href="/person/1c87c07be01a1933901011d770fb1cde2/author/4"><span itemprop="name">H. Ali</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Daniel Hoppe Alvarez" itemprop="url" href="/person/1c87c07be01a1933901011d770fb1cde2/author/5"><span itemprop="name">D. Alvarez</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Christoph Lange" itemprop="url" href="/person/1c87c07be01a1933901011d770fb1cde2/author/6"><span itemprop="name">C. Lange</span></a></span>, </span> and <span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Stefan Decker" itemprop="url" href="/person/1c87c07be01a1933901011d770fb1cde2/author/7"><span itemprop="name">S. Decker</span></a></span></span>. </span><span class="additional-entrytype-information"><span itemtype="http://schema.org/Book" itemscope="itemscope" itemprop="isPartOf"><em><span itemprop="name">ESWC2021 Poster and Demo Track</span>, </em></span>(<em><span>2021<meta content="2021" itemprop="datePublished"/></span></em>)</span>Thu Oct 21 12:10:32 CEST 2021ESWC2021 Poster and Demo TrackTowards Easy Vocabulary Drafts with Neologism 2.02021metadata ontologie tools Shared vocabularies and ontologies are essential for many applications. Although standards and recommendations already cover many areas, adaptations are usually necessary to represent concrete use-cases properly. Domain experts are unfamiliar with ontology engineering, which creates special requirements for needed tool support. Simple sketch applications are usually too imprecise, while comprehensive ontology editors are often too complicated for non-experts. We present Neologism 2.0 - an open-source tool for quick vocabulary creation through domain experts. Its guided vocabulary creation and its collaborative graph editor enable the quick creation of proper vocabularies, even for non-experts, and dramatically reduces the time and effort to draft vocabularies collaboratively. An RDF export allows quick bootstrapping of any other Semantic Web tool.Towards Easy Vocabulary Drafts with Neologism 2.0 | OpenReviewErfahrungen und Empfehlungen aus der Beratung bei Datenmanagementplänenhttps://puma.ub.uni-stuttgart.de/bibtex/2a5c89b6545b23c60bfc4e6d6dc1e603c/diglezakisdiglezakis2021-10-16T15:00:57+02:00checklisten forschungsdaten dmp tools <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Kerstin Helbig" itemprop="url" href="/person/19b9e42ef6af0685c0d6970d00129582b/author/0"><span itemprop="name">K. Helbig</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Ivonne Anders" itemprop="url" href="/person/19b9e42ef6af0685c0d6970d00129582b/author/1"><span itemprop="name">I. Anders</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Petra Buchholz" itemprop="url" href="/person/19b9e42ef6af0685c0d6970d00129582b/author/2"><span itemprop="name">P. Buchholz</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Gianpiero Favella" itemprop="url" href="/person/19b9e42ef6af0685c0d6970d00129582b/author/3"><span itemprop="name">G. Favella</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Daniela Hausen" itemprop="url" href="/person/19b9e42ef6af0685c0d6970d00129582b/author/4"><span itemprop="name">D. Hausen</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Sonja Hendriks" itemprop="url" href="/person/19b9e42ef6af0685c0d6970d00129582b/author/5"><span itemprop="name">S. Hendriks</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Jochen Klar" itemprop="url" href="/person/19b9e42ef6af0685c0d6970d00129582b/author/6"><span itemprop="name">J. Klar</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Evamaria Krause" itemprop="url" href="/person/19b9e42ef6af0685c0d6970d00129582b/author/7"><span itemprop="name">E. Krause</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Thilo Paul-Stüve" itemprop="url" href="/person/19b9e42ef6af0685c0d6970d00129582b/author/8"><span itemprop="name">T. Paul-Stüve</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Karsten Peters" itemprop="url" href="/person/19b9e42ef6af0685c0d6970d00129582b/author/9"><span itemprop="name">K. Peters</span></a></span></span> and 7 other author(s). </span><span class="additional-entrytype-information"><span itemtype="http://schema.org/PublicationIssue" itemscope="itemscope" itemprop="isPartOf"><em><span itemprop="journal">Bausteine Forschungsdatenmanagement</span>, </em> </span>(<em><span>Okt. 2020<meta content="Okt. 2020" itemprop="datePublished"/></span></em>)</span>Sat Oct 16 15:00:57 CEST 2021Bausteine ForschungsdatenmanagementOkt.229–40Erfahrungen und Empfehlungen aus der Beratung bei Datenmanagementplänen2020checklisten forschungsdaten dmp tools The FOSSology Project: 10 Years Of License Scanninghttps://puma.ub.uni-stuttgart.de/bibtex/204c6a0c5e18cb4a6762d493dcfa3a27e/diglezakisdiglezakis2021-04-29T11:17:28+02:00software tools licensing <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Michael C. Jaeger" itemprop="url" href="/person/1540fc92633935a1aa48aed42893e0023/author/0"><span itemprop="name">M. Jaeger</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Oliver Fendt" itemprop="url" href="/person/1540fc92633935a1aa48aed42893e0023/author/1"><span itemprop="name">O. Fendt</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Robert Gobeille" itemprop="url" href="/person/1540fc92633935a1aa48aed42893e0023/author/2"><span itemprop="name">R. Gobeille</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Maximilian Huber" itemprop="url" href="/person/1540fc92633935a1aa48aed42893e0023/author/3"><span itemprop="name">M. Huber</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Johannes Najjar" itemprop="url" href="/person/1540fc92633935a1aa48aed42893e0023/author/4"><span itemprop="name">J. Najjar</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Kate Stewart" itemprop="url" href="/person/1540fc92633935a1aa48aed42893e0023/author/5"><span itemprop="name">K. Stewart</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Steffen Weber" itemprop="url" href="/person/1540fc92633935a1aa48aed42893e0023/author/6"><span itemprop="name">S. Weber</span></a></span>, </span> and <span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Andreas Würl" itemprop="url" href="/person/1540fc92633935a1aa48aed42893e0023/author/7"><span itemprop="name">A. Würl</span></a></span></span>. </span><span class="additional-entrytype-information"><span itemtype="http://schema.org/PublicationIssue" itemscope="itemscope" itemprop="isPartOf"><em><span itemprop="journal">Journal of Open Law, Technology & Society</span>, </em> <em><span itemtype="http://schema.org/PublicationVolume" itemscope="itemscope" itemprop="isPartOf"><span itemprop="volumeNumber">9 </span></span>(<span itemprop="issueNumber">1</span>):
<span itemprop="pagination">9-18</span></em> </span>(<em><span>2018<meta content="2018" itemprop="datePublished"/></span></em>)</span>Thu Apr 29 11:17:28 CEST 2021Journal of Open Law, Technology & Society19-18The FOSSology Project: 10 Years Of License Scanning92018software tools licensing The FOSSology Project: 10 Years Of License Scanning | Jaeger | Journal of Open Law, Technology & SocietyLabTablet: Semantic Metadata Collection on a Multi-domain Laboratory Notebookhttps://puma.ub.uni-stuttgart.de/bibtex/289b88eb3feb85e97a970bd606d979e78/diglezakisdiglezakis2021-02-15T07:13:52+01:00forschungsdaten metadata ontologie eln tools <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Ricardo Amorim" itemprop="url" href="/person/16b95aa7fa053f45d56eebe5cd84a28cc/author/0"><span itemprop="name">R. Amorim</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="João Aguiar Castro" itemprop="url" href="/person/16b95aa7fa053f45d56eebe5cd84a28cc/author/1"><span itemprop="name">J. Aguiar Castro</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="João Rocha" itemprop="url" href="/person/16b95aa7fa053f45d56eebe5cd84a28cc/author/2"><span itemprop="name">J. Rocha</span></a></span>, </span> and <span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Cristina Ribeiro" itemprop="url" href="/person/16b95aa7fa053f45d56eebe5cd84a28cc/author/3"><span itemprop="name">C. Ribeiro</span></a></span></span>. </span><span class="additional-entrytype-information"><span itemtype="http://schema.org/Book" itemscope="itemscope" itemprop="isPartOf"></span><em> 478, </em><em>page <span itemprop="pagination">193-205</span>. </em>(<em><span>November 2014<meta content="November 2014" itemprop="datePublished"/></span></em>)</span>Mon Feb 15 07:13:52 CET 2021Communications in Computer and Information Science11193-205LabTablet: Semantic Metadata Collection on a Multi-domain Laboratory Notebook4782014forschungsdaten metadata ontologie eln tools Like a rainbow in the dark: metadata annotation for HPC applications in the age of dark datahttps://puma.ub.uni-stuttgart.de/bibtex/2a01fba3c690fedfaaa51e2be254cafb6/diglezakisdiglezakis2021-02-09T17:31:47+01:00forschungsdaten hpc-computing metadata tools automated <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Björn Schembera" itemprop="url" href="/person/1b6eac40c2b6d9e29e99c8eece7d9e01b/author/0"><span itemprop="name">B. Schembera</span></a></span></span>. </span><span class="additional-entrytype-information"><span itemtype="http://schema.org/PublicationIssue" itemscope="itemscope" itemprop="isPartOf"><em><span itemprop="journal">The Journal of Supercomputing</span>, </em> </span>(<em><span>2021<meta content="2021" itemprop="datePublished"/></span></em>)</span>Tue Feb 09 17:31:47 CET 2021The Journal of SupercomputingLike a rainbow in the dark: metadata annotation for HPC applications in the age of dark data2021forschungsdaten hpc-computing metadata tools automated The deluge of dark data is about to happen. Lacking data management capabilities, especially in the field of supercomputing, and missing data documentation (i.e., missing metadata annotation) constitute a major source of dark data. The present work contributes to addressing this challenge by presenting ExtractIng, a generic automated metadata extraction toolkit. Existing metadata information of simulation output files scattered through the file system, can be aggregated, parsed and converted to the EngMeta metadata model. Use cases from computational engineering are considered to demonstrate the viability of ExtractIng. The evaluation results show that the metadata extraction is simulation-code independent in the sense that it can handle data outputs from various fields of science, is easy to integrate into simulation workflows and compatible with a multitude of computational environments.