PUMA publications for /bibtexkey/Schulz2018Uncertainty/visushttps://puma.ub.uni-stuttgart.de/bibtexkey/Schulz2018Uncertainty/visusPUMA RSS feed for /bibtexkey/Schulz2018Uncertainty/visus2024-03-19T08:37:31+01:00- Uncertainty Visualization for Secondary Structures of Proteinshttps://puma.ub.uni-stuttgart.de/bibtex/270436512ee33682c3ee2b91b06a72de7/visusvisus2020-10-09T12:31:50+02:00A01 from:leonkokkoliadis visus:weiskopf sfbtrr161 from:mueller visus:braunms visus:ertl visus visus:schatzkn visus:schulzch <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Christoph Schulz" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/0"><span itemprop="name">C. Schulz</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Karsten Schatz" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/1"><span itemprop="name">K. Schatz</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Michael Krone" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/2"><span itemprop="name">M. Krone</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Matthias Braun" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/3"><span itemprop="name">M. Braun</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Thomas Ertl" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/4"><span itemprop="name">T. Ertl</span></a></span>, </span> and <span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Daniel Weiskopf" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/5"><span itemprop="name">D. Weiskopf</span></a></span></span>. </span><span class="additional-entrytype-information"><span itemtype="http://schema.org/Book" itemscope="itemscope" itemprop="isPartOf"><em><span itemprop="name">Proceedings of the IEEE Pacific Visualization Symposium (PacificVis)</span>, </em></span><em>page <span itemprop="pagination">96-105</span>. </em><em><span itemprop="publisher">IEEE</span>, </em>(<em><span>2018<meta content="2018" itemprop="datePublished"/></span></em>)</span>Fri Oct 09 12:31:50 CEST 2020Proceedings of the IEEE Pacific Visualization Symposium (PacificVis)96-105Uncertainty Visualization for Secondary Structures of Proteins2018A01 from:leonkokkoliadis visus:weiskopf sfbtrr161 from:mueller visus:braunms visus:ertl visus visus:schatzkn visus:schulzch We present a technique that conveys the uncertainty in the secondary structure of proteins-an abstraction model based on atomic coordinates. While protein data inherently contains uncertainty due to the acquisition method or the simulation algorithm, we argue that it is also worth investigating uncertainty induced by analysis algorithms that precede visualization. Our technique helps researchers investigate differences between multiple secondary structure assignment methods. We modify established algorithms for fuzzy classification and introduce a discrepancy-based approach to project an ensemble of sequences to a single importance-weighted sequence. In 2D, we depict the aggregated secondary structure assignments based on the per-residue deviation in a collapsible sequence diagram. In 3D, we extend the ribbon diagram using visual variables such as transparency, wave form, frequency, or amplitude to facilitate qualitative analysis of uncertainty. We evaluated the effectiveness and acceptance of our technique through expert reviews using two example applications: the combined assignment against established algorithms and time-dependent structural changes originating from simulated protein dynamics.Uncertainty Visualization for Secondary Structures of Proteins
- Uncertainty Visualization for Secondary Structures of Proteinshttps://puma.ub.uni-stuttgart.de/bibtex/206bb396b6f5a48b9fdbec5e1afd0c51c/visusvisus2018-08-20T14:39:46+02:002018 from:christophschulz myown sfb716 sfb716-d4 sfb716-d4-ertl sfbtrr161 vis(us) visus visus:braunms visus:ertl visus:kroneml visus:schatzkn visus:schulzch visus:weiskopf <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Christoph Schulz" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/0"><span itemprop="name">C. Schulz</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Karsten Schatz" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/1"><span itemprop="name">K. Schatz</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Michael Krone" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/2"><span itemprop="name">M. Krone</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Matthias Braun" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/3"><span itemprop="name">M. Braun</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Thomas Ertl" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/4"><span itemprop="name">T. Ertl</span></a></span>, </span> and <span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Daniel Weiskopf" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/5"><span itemprop="name">D. Weiskopf</span></a></span></span>. </span><span class="additional-entrytype-information"><span itemtype="http://schema.org/Book" itemscope="itemscope" itemprop="isPartOf"><em><span itemprop="name">IEEE Pacific Visualization Symposium</span>, </em></span><em>page <span itemprop="pagination">96-105</span>. </em>(<em><span>2018<meta content="2018" itemprop="datePublished"/></span></em>)</span>Mon Aug 20 14:39:46 CEST 2018IEEE Pacific Visualization Symposium96-105Uncertainty Visualization for Secondary Structures of Proteins20182018 from:christophschulz myown sfb716 sfb716-d4 sfb716-d4-ertl sfbtrr161 vis(us) visus visus:braunms visus:ertl visus:kroneml visus:schatzkn visus:schulzch visus:weiskopf
- Uncertainty Visualization for Secondary Structures of Proteinshttps://puma.ub.uni-stuttgart.de/bibtex/261e758f5ab4adcd9e55e04d2831731ab/visusvisus2018-08-20T14:39:23+02:00sfb716-d4-ertl myown visus:kroneml sfbtrr161 from:christophschulz visus:ertl visus visus:schatzkn sfb716-d4 visus:weiskopf 2018 vis(us) visus:schulzch <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Christoph Schulz" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/0"><span itemprop="name">C. Schulz</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Karsten Schatz" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/1"><span itemprop="name">K. Schatz</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Michael Krone" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/2"><span itemprop="name">M. Krone</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Matthias Braun" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/3"><span itemprop="name">M. Braun</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Thomas Ertl" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/4"><span itemprop="name">T. Ertl</span></a></span>, </span> and <span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Daniel Weiskopf" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/5"><span itemprop="name">D. Weiskopf</span></a></span></span>. </span><span class="additional-entrytype-information"><span itemtype="http://schema.org/Book" itemscope="itemscope" itemprop="isPartOf"><em><span itemprop="name">2018 IEEE Pacific Visualization Symposium</span>, </em></span><em>page <span itemprop="pagination">96-105</span>. </em>(<em><span>2018<meta content="2018" itemprop="datePublished"/></span></em>)</span>Mon Aug 20 14:39:23 CEST 20182018 IEEE Pacific Visualization Symposium96-105Uncertainty Visualization for Secondary Structures of Proteins2018sfb716-d4-ertl myown visus:kroneml sfbtrr161 from:christophschulz visus:ertl visus visus:schatzkn sfb716-d4 visus:weiskopf 2018 vis(us) visus:schulzch
- Uncertainty Visualization for Secondary Structures of Proteinshttps://puma.ub.uni-stuttgart.de/bibtex/20978751ec20feb829fa4f6d993c4ab5d/visusvisus2018-08-20T14:34:32+02:00sfb716-d4-ertl myown visus:kroneml sfbtrr161 from:christophschulz visus:ertl visus visus:schatzkn sfb716-d4 visus:weiskopf 2018 vis(us) visus:schulzch <span data-person-type="author" class="authorEditorList "><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Christoph Schulz" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/0"><span itemprop="name">C. Schulz</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Karsten Schatz" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/1"><span itemprop="name">K. Schatz</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Michael Krone" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/2"><span itemprop="name">M. Krone</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Matthias Braun" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/3"><span itemprop="name">M. Braun</span></a></span>, </span><span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Thomas Ertl" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/4"><span itemprop="name">T. Ertl</span></a></span>, </span> and <span><span itemtype="http://schema.org/Person" itemscope="itemscope" itemprop="author"><a title="Daniel Weiskopf" itemprop="url" href="/person/1a0fda330dcf0712450cfd6fa15eeb884/author/5"><span itemprop="name">D. Weiskopf</span></a></span></span>. </span><span class="additional-entrytype-information"><span itemtype="http://schema.org/Book" itemscope="itemscope" itemprop="isPartOf"><em><span itemprop="name">IEEE PacificVis</span>, </em></span><em> 2018 IEEE Pacific Visualization Symposium, </em><em>page <span itemprop="pagination">96-105</span>. </em>(<em><span>2018<meta content="2018" itemprop="datePublished"/></span></em>)</span>Mon Aug 20 14:34:32 CEST 2018IEEE PacificVis96-105Uncertainty Visualization for Secondary Structures of Proteins2018 IEEE Pacific Visualization Symposium2018sfb716-d4-ertl myown visus:kroneml sfbtrr161 from:christophschulz visus:ertl visus visus:schatzkn sfb716-d4 visus:weiskopf 2018 vis(us) visus:schulzch